CX286966

Overview
NameCX286966
Unique NameCX286966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286966_ssr68 microsatellite CX286966_ssr68:68..79. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15 contig Ccv1_Contig15:1..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286966 vs. ExPASy Swiss-Prot
Match: BCHH_RHOS4 (Magnesium-chelatase subunit H OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchH PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.740e-31
Identity = 69/166 (41.57%), Postives = 99/166 (59.64%), Query Frame = 1
Query:  163 DMYLSRKSFAFDCDAPGAGMSEKRKVFEMALGTADATFQNLDSSEISLTDVSHYFDSDPTNLVQSFRKDGKKPNAYIADTTTANAQVRTLAETVRLDARTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNP 660
            D Y +RKSFA+          +   + + +L T D  +QNL+S E+ +T V HYFD+         R  G++ + YI D T     VRTL + + L+ R + LNPK+YEG++  G EGVR+IE ++TNT+GWSAT+ QV+ WVY+  + TF+ DE M  RL   NP
Sbjct:  985 DAYEARKSFAYGRSGKPV---QNAALLQKSLKTVDVAYQNLESVELGVTTVDHYFDTLGGIARAVKRARGEEASVYIGDQTRGGGTVRTLKDQIALETRARSLNPKYYEGLLKHGAEGVRQIEAQVTNTLGWSATTQQVEPWVYQRLSETFVLDEAMRRRLAELNP 1147          
BLAST of CX286966 vs. ExPASy Swiss-Prot
Match: BCHH_RHOCA (Magnesium-chelatase subunit H OS=Rhodobacter capsulatus GN=bchH PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.740e-31
Identity = 73/167 (43.71%), Postives = 104/167 (62.28%), Query Frame = 1
Query:  163 DMYLSRKSFAFDCDAPGAGMSEKR-KVFEMALGTADATFQNLDSSEISLTDVSHYFDSDPTNLVQSFR-KDGKKPNAYIADTTTANAQVRTLAETVRLDARTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTN 657
            D Y +RKSFA+  D    G S K+  + +  L   D  +QNL+S E+ +T V HYFD+       + R + GK+   YI D T     VRTL + + L+ R + LNPK+YEG++  G EGVR+IE ++TNT+GWSAT+GQV+ WVY+  + TF+ D+EM  RL + N
Sbjct:  985 DAYEARKSFAYGRD----GKSTKQVNLLQNVLSKVDLAYQNLESVELGVTTVDHYFDTLGGIARATKRAQGGKETPVYIGDQTRGAGTVRTLQDQIALETRARSLNPKFYEGLLKHGAEGVRQIEAQVTNTLGWSATTGQVEPWVYQRLSETFVLDDEMRERLASLN 1147          
BLAST of CX286966 vs. ExPASy Swiss-Prot
Match: BCHH_CHLP8 (Magnesium-chelatase subunit H OS=Chlorobaculum parvum (strain NCIB 8327) GN=bchH PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.590e-24
Identity = 55/168 (32.74%), Postives = 96/168 (57.14%), Query Frame = 1
Query:  163 DMYLSRKSFAFDCDAPGAGMSEKRKVFEMALGTADATFQNLDSSEISLTDVSHYFDSDPTNLVQSFRKDGKKPNAYI--ADTTTANAQVRTLAETVRLDARTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNP 660
            D+++ R S A+     G   SE   + +  LG+ D     +DS+E  ++D+ HYF S  +  + + R++ K  +  +   ++ T++ ++    +++R++ R+KLLNPKW+EGM+  G+ G  EI  R+T  +GW A +  VD+WVY++   T+  D EM  RL   NP
Sbjct: 1061 DLFIRRNSSAYGGGRKGEKQSE---ILQKLLGSVDRVVHQVDSTEFGISDIDHYFSSSGSLQLAARRRNTKTSDIKLNYVESFTSDIKLDEADKSLRVEYRSKLLNPKWFEGMLKHGHSGAGEISNRVTYMLGWDAVTKSVDDWVYKKTAETYALDPEMRERLATLNP 1225          
BLAST of CX286966 vs. ExPASy Swiss-Prot
Match: Y1441_METJA (Uncharacterized protein MJ1441 OS=Methanocaldococcus jannaschii GN=MJ1441 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.785e-21
Identity = 59/160 (36.88%), Postives = 87/160 (54.37%), Query Frame = 1
Query:  160 RDMYLSRKSFAFDCDAPGAGMSEKRKVFEMALGTADATFQNLDSSEISLTDVSHYFDSDP--TNLVQSFRKDGKKPNAYIADTTTAN-AQVRTLAETVRLDARTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEE 630
            +D ++   S+A+  D  G    +    FE  L T D TF  + + E  L     YF +    TN  +  +  G++  AY  DT   N  +VRTL E +   + TKLLNPKW EGM   GY+G  +I KR+    GWSAT+ +V+NW+++E   TF+++EE
Sbjct:  989 KDAFIYWNSYAYGKDVYG---KKAINAFENILKTVDLTFNKVVTDEYDLFGCCCYFGTHGGLTNAARVLK--GEEVKAYYGDTRNPNNVEVRTLKEEIERVSLTKLLNPKWIEGMKRHGYKGAGDIAKRIGRVYGWSATTKEVENWIFDEIFNTFVKNEE 1143          
BLAST of CX286966 vs. ExPASy Swiss-Prot
Match: Y908_METJA (Uncharacterized protein MJ0908 OS=Methanocaldococcus jannaschii GN=MJ0908 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 51/148 (34.46%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  226 EKRKVFEMALGTADATFQNLDSSEISLTDVSHYFDSDPTNLVQSFRK-DGKKPNAYIADTTTANAQVRT--LAETVRLDARTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNP 660
            E ++ F   L   + T +N DS E  + +    F+S    L+ S     GKKP +Y+ DT+  N  +RT  L E  +   RTK++NPKW EGM   GY+G  +  K + +   W ATSG +D+W+YE+    ++ D++M       NP
Sbjct: 1043 EAKEEFINRLSKIELTVKNEDSQEWDIFEGDD-FNSYHGGLIASVTYYSGKKPVSYVGDTSNPN-DIRTKHLKEEGKEIFRTKIMNPKWIEGMKRHGYKGAADFSKYVDHMFAWDATSGIIDDWMYEKIAEKYVFDKDMEEFFKENNP 1188          
BLAST of CX286966 vs. ExPASy Swiss-Prot
Match: COBN_PSEDE (Aerobic cobaltochelatase subunit cobN OS=Pseudomonas denitrificans GN=cobN PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 49/167 (29.34%), Postives = 82/167 (49.10%), Query Frame = 1
Query:  163 DMYLSRKSFAFDCDAPGAGMSEKRKVFEMALGTADATFQNLDSSEISLTDVSHYFDSDPTNLVQSFRKDGKKPNAYIADTTTANAQV-RTLAETVRLDARTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNP 660
            + YL+  ++A+     G     +R +FE  L T +A  QN D+ E  L D   Y+  +      + +  G +P  Y  D +     V R+L E +    R +++NPKW +G+M  GY+G  EI   +     ++AT+G V +  +E A   FI DE + + + + NP
Sbjct: 1067 EAYLTWGAYAYGAGEEGKA---ERDLFEERLRTIEAVVQNQDNREHDLLDSDDYYQFEGGMSAAAEQLGGHRPAIYHNDHSRPEKPVIRSLEEEIGRVVRARVVNPKWIDGVMRHGYKGAFEIAATVDYMFAFAATTGAVRDHHFEAAYQAFIVDERVADFMRDKNP 1230          
The following BLAST results are available for this feature:
BLAST of CX286966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
BCHH_RHOS41.740e-3141.57Magnesium-chelatase subunit H OS=Rhodobacter sphae... [more]
BCHH_RHOCA1.740e-3143.71Magnesium-chelatase subunit H OS=Rhodobacter capsu... [more]
BCHH_CHLP84.590e-2432.74Magnesium-chelatase subunit H OS=Chlorobaculum par... [more]
Y1441_METJA2.785e-2136.88Uncharacterized protein MJ1441 OS=Methanocaldococc... [more]
Y908_METJA3.523e-1634.46Uncharacterized protein MJ0908 OS=Methanocaldococc... [more]
COBN_PSEDE9.594e-1429.34Aerobic cobaltochelatase subunit cobN OS=Pseudomon... [more]
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Properties
Property NameValue
Genbank descriptionC01003B01SK Veg1 Citrus clementina cDNA clone C01003B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286966 ID=CX286966; Name=CX286966; organism=Citrus clementina; type=EST; length=665bp
CACGAGGATAGAGTGAGCAAAATCATCTCTCTCTATCCGCATAAATCAAA
TCAAATAAAGTAAAGTAAAATAAATAAATAAAATTTCAAAATAACATTAA
TTAAGAATTAAGAAAAAAAAAAAAAAAAAACTCGAGACCCTCGTGCCGAA
TTCGGCACGAGGGACATGTATTTGAGCAGGAAGTCCTTTGCCTTTGATTG
TGATGCCCCTGGCGCAGGCATGAGTGAGAAAAGAAAAGTTTTTGAGATGG
CTCTAGGCACAGCAGACGCCACATTCCAAAACCTCGACTCCTCTGAAATC
TCCCTCACTGATGTGAGCCACTACTTCGATTCCGACCCAACAAATTTGGT
CCAGAGCTTCAGGAAGGATGGAAAGAAGCCTAATGCCTACATTGCTGATA
CTACCACAGCTAATGCTCAGGTGCGTACACTTGCTGAGACCGTGAGGCTT
GATGCGCGAACCAAATTGTTGAACCCGAAATGGTATGAAGGAATGATGTC
CAGTGGTTATGAGGGTGTTCGTGAAATTGAGAAGCGGCTTACTAACACTG
TTGGGTGGAGTGCAACTTCGGGCCAAGTTGACAACTGGGTCTACGAAGAA
GCTAACACTACCTTTATCCAAGATGAGGAAATGTTGAACAGGCTGATGAA
TACCAATCCAAATTC
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