CX286969

Overview
NameCX286969
Unique NameCX286969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13848 contig Ccv1_Contig13848:863..1466. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286969 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.334e-44
Identity = 91/110 (82.73%), Postives = 100/110 (90.91%), Query Frame = -3
Query:  273 VKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFILAATENSEIVDA 602
            VKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LGQPNA+DGT+  V  V PE ILAA +++E  DA
Sbjct:  249 VKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTY--VGGVHPELILAAADSAETADA 356          
BLAST of CX286969 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.669e-43
Identity = 91/110 (82.73%), Postives = 97/110 (88.18%), Query Frame = -3
Query:  273 VKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFILAATENSEIVDA 602
            VKRLKSIGMID VPGMKALDMNTAEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALKALG PNAIDGT   V  + PE +LAA +++E VDA
Sbjct:  242 VKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTL--VGNLSPELVLAAADSAETVDA 349          
BLAST of CX286969 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.669e-43
Identity = 90/110 (81.82%), Postives = 99/110 (90.00%), Query Frame = -3
Query:  273 VKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFILAATENSEIVDA 602
            VK L+SIGMID+VPGMKALDMN AEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG PNA+DG++  V  + PE ILAA +++EI DA
Sbjct:  245 VKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSY--VGGIHPELILAAADSAEIADA 352          
BLAST of CX286969 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.037e-42
Identity = 85/110 (77.27%), Postives = 96/110 (87.27%), Query Frame = -3
Query:  273 VKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFILAATENSEIVDA 602
            VKRL+ IGMI +VPGMKALDMN AED IVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG+PNA+DGT  EV+    E  + A+++ E+VDA
Sbjct:  245 VKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTIPEVSPALREEFVIASKDDEVVDA 354          
BLAST of CX286969 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.907e-40
Identity = 85/110 (77.27%), Postives = 95/110 (86.36%), Query Frame = -3
Query:  273 VKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFILAATENSEIVDA 602
            VKRL+ IGMI +VPGMKALDMNTAED IVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG+PNA+DGT S       E ++ A ++ E+VDA
Sbjct:  248 VKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLR---EELMIAYKDDEVVDA 354          
BLAST of CX286969 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.663e-22
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = -3
Query:  372 VKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 602
            VKRL S+G I+ + GM+ LDMN AEDAIV+ TREIVPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK +
Sbjct:  239 VKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALKVI 315          
BLAST of CX286969 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.500e-20
Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = -3
Query:  378 VKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 602
            VKRL S+  I+ + GM+ LDMN AEDAIV+ TREIVPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  235 VKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CX286969 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 7.445e-20
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = -3
Query:  366 KRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQ 599
            KRL S+G +D + GM+ LDMN+AEDAIV+ TRE+  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK   +
Sbjct:  243 KRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALKVFDE 320          
BLAST of CX286969 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.128e-18
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = -3
Query:  351 VKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAID 602
            VKRL S  ++ ++  M+ LDMN AED IV+ TRE+ PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++
Sbjct:  241 VKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVN 324          
BLAST of CX286969 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.085e-18
Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = -3
Query:  348 VKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDG 602
            VKR+ S G+ + +  M+ LDM  AED I   TREI+PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL++L +    +G
Sbjct:  247 VKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEG 331          
The following BLAST results are available for this feature:
BLAST of CX286969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
THI4_CITSI4.334e-4482.73Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ARATH3.669e-4382.73Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI4_ALNGL3.669e-4381.82Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI42_MAIZE9.037e-4277.27Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI41_MAIZE2.907e-4077.27Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI4_FUSSH4.663e-2267.53Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX1.500e-2068.00Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR7.445e-2060.26Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI2_SCHPO3.128e-1855.95Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_UROFA4.085e-1851.76Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]

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Properties
Property NameValue
Genbank descriptionC01003B04SK Veg1 Citrus clementina cDNA clone C01003B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286969 ID=CX286969; Name=CX286969; organism=Citrus clementina; type=EST; length=604bp
TCGGCACGAGGGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTATGTAAAC
ATTTGCTTTTATTTTTTATTTTCTATTTCAACATAAAAGCAGCATTGCCG
TGCTTTTTTTTTTAGCTGTTGAATTCATTAATTTGGAACTCAACAAAAAT
CGAAGAAAAATTACACCAAATTTAGTGGCCGATCGTAGTTACAATTTTTA
TTTTTTTTGGGTTTATTGTTGATTTTGAATTCTCATCAAAATGTACATAA
TTCTCAGATTTTATAATTTTTAAGCATCAACAATCTCGCTGTTCTCAGTG
GCAGCAAGGATAAACTCTGGCTGTACTTCCGTAACTTCACTGAATGTCCC
ATCTATCGCATTCGGCTGCCCCAATGCCTTCAACGCCAAGTGGGCTGCCT
TCTGCCCTGAAATCATCATGGCCCCGAATGTAGGTCCCATTCTAGGGGCA
CCGTCGATCTCTGCGACTTCCATGCCCGTGACAATCATGCCAGGCACGAT
CTCCCTGGTAAGCCTAACGATAGCATCCTCTGCAGTGTTCATATCGAGAG
CTTTCATTCCGGGGACGGAGTCAATCATGCCAATACTCTTAAGCCTCTTA
ACAC
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