CX286973

Overview
NameCX286973
Unique NameCX286973
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX286973 vs. ExPASy Swiss-Prot
Match: CPR49_ARATH (GDSL esterase/lipase CPRD49 OS=Arabidopsis thaliana GN=CPRD49 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23
Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 2 
Query:    5 IDLWTAMQQRDDWLTTCFMDGIHFSSEGSKIVVTEILKVLREADWEPSLHWRSLPTEFDEDSSYYPVAPDGQSTVNVSDTNIYGPWE 265
            +DL++  Q+ DDW T CF DGIH S++GSKIV  EIL+V++EA+W PSLHW+S+PTEF +DS Y  V+ DG+ TVN S+   +  WE
Sbjct:  168 VDLFSTFQKADDWKTVCFTDGIHLSAQGSKIVAGEILRVVKEAEWHPSLHWKSMPTEFADDSPYDLVSADGKQTVNSSEWTYF--WE 252
[Close]
BLAST of CX286973 vs. ExPASy Swiss-Prot
Match: GDL46_ARATH (GDSL esterase/lipase At2g38180 OS=Arabidopsis thaliana GN=At2g38180 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.403e-20
Identity = 42/61 (68.85%), Postives = 53/61 (86.89%), Query Frame = 2 
Query:    5 IDLWTAMQQRDDWLTTCFMDGIHFSSEGSKIVVTEILKVLREADWEPSLHWRSLPTEFDED 187
            ID+WTA+QQ+DDWL +CF DGIHF+++ S+IVV EILKVLR ADW+PSL+W+SLP EF  D
Sbjct:  166 IDIWTAIQQQDDWLNSCFTDGIHFTAKASEIVVKEILKVLRGADWKPSLYWKSLPVEFPFD 226
The following BLAST results are available for this feature:
BLAST of CX286973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CPR49_ARATH1.356e-2355.17GDSL esterase/lipase CPRD49 OS=Arabidopsis thalian... [more]
GDL46_ARATH1.403e-2068.85GDSL esterase/lipase At2g38180 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionC01003B08SK Veg1 Citrus clementina cDNA clone C01003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286973 ID=CX286973; Name=CX286973; organism=Citrus clementina; type=EST; length=468bp
GGCCATCGATCTTTGGACTGCTATGCAACAGCGGGATGATTGGTTGACCA
CTTGTTTTATGGACGGAATCCACTTTTCATCTGAGGGGAGCAAGATTGTG
GTTACAGAGATACTGAAAGTCCTCAGGGAAGCAGACTGGGAACCAAGCCT
TCATTGGAGATCACTGCCGACTGAATTTGACGAGGATTCTTCCTATTATC
CGGTTGCTCCTGACGGGCAGAGCACTGTAAACGTTTCGGACACCAACATT
TATGGGCCGTGGGAATAGATCTTAACAATATTTGTCACCAGCTTACAATC
TTTTTCTTCGTATCAGGAACTGCTTTGAACTTGTGATCTTCAAAAACCCT
ATCTTAATGAAAGAAATTGTATCTCCATTCTCAGTAACAAAGAGAGCTCT
AGTTCATAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCCCTCGTGC
CGAATGGGGGGGCCCGGT
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