CX286975

Overview
NameCX286975
Unique NameCX286975
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286975_ssr135 microsatellite CX286975_ssr135:135..146. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX286975 vs. ExPASy Swiss-Prot
Match: TC159_ARATH (Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 6.007e-37
Identity = 81/139 (58.27%), Postives = 88/139 (63.31%), Query Frame = 2
Query:   50 RTHPKLPTDQGGDNADSDIXXXXXXXXXXXXXXXXXXXX-PPFKPLRKAQIAKLSKEQKKAYFEEYDYRVKLLQKKQWXXXXXXXXXXXXXGNAATE-DYGYVGEDVDQENGSSAAVPVPLPDMVLPQSFDGDNPAYRY 460
            R HPKLP DQGGD+ DSDI                     PPFKPLRK Q+AKLS EQ+KAYFEEYDYRVKLLQKKQW             G    E ++GY GE+ D ENG+ AAVPVPLPDMVLP SFD DN AYRY
Sbjct: 1109 RAHPKLPGDQGGDSVDSDIEIDDVSDSEQEDGEDDEYDQLPPFKPLRKTQLAKLSNEQRKAYFEEYDYRVKLLQKKQWREELKRMKEMKKNGKKLGESEFGYPGEEDDPENGAPAAVPVPLPDMVLPPSFDSDNSAYRY 1247          
BLAST of CX286975 vs. ExPASy Swiss-Prot
Match: TC132_ARATH (Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.995e-20
Identity = 56/137 (40.88%), Postives = 68/137 (49.64%), Query Frame = 2
Query:   50 RTHPKLPTDQGGDNADSDIXXXXXXXXXXXXXXXXXXXXPPFKPLRKAQIAKLSKEQKKAYFEEYDYRVKLLQKKQWXXXXXXXXXXXXXGNAATEDYGYVGEDVDQENGSSAAVPVPLPDMVLPQSFDGDNPAYRY 460
            R  PKLP  Q GD  D D                     PPFK L KAQ+A LSK QKK Y +E +YR KLL KKQ                   +      E+V++E+G  A+VPVP+PD+ LP SFD DNP +RY
Sbjct:  822 RPQPKLPEQQYGDEEDED----DLEESSDSDEESEYDQLPPFKSLTKAQMATLSKSQKKQYLDEMEYREKLLMKKQMKEERKRRKMFKKFAAEIKDLPDGYSENVEEESGGPASVPVPMPDLSLPASFDSDNPTHRY 954          
BLAST of CX286975 vs. ExPASy Swiss-Prot
Match: TC120_ARATH (Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.018e-17
Identity = 50/137 (36.50%), Postives = 63/137 (45.99%), Query Frame = 2
Query:   50 RTHPKLPTDQGGDNADSDIXXXXXXXXXXXXXXXXXXXXPPFKPLRKAQIAKLSKEQKKAYFEEYDYRVKLLQKKQWXXXXXXXXXXXXXGNAATEDYGYVGEDVDQENGSSAAVPVPLPDMVLPQSFDGDNPAYRY 460
            R   KLP  Q  D  D D                     PPFK L KA++ KLSK QKK Y +E +YR KL  K+Q                   +      E+V++E    A+VPVP+PD+ LP SFD DNP +RY
Sbjct:  704 RPQAKLPEQQYDDEDDED----DLDESSDSEEESEYDELPPFKRLTKAEMTKLSKSQKKEYLDEMEYREKLFMKRQMKEERKRRKLLKKFAAEIKDMPNGYSENVEEERSEPASVPVPMPDLSLPASFDSDNPTHRY 836          
The following BLAST results are available for this feature:
BLAST of CX286975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TC159_ARATH6.007e-3758.27Translocase of chloroplast 159, chloroplastic OS=A... [more]
TC132_ARATH2.995e-2040.88Translocase of chloroplast 132, chloroplastic OS=A... [more]
TC120_ARATH9.018e-1736.50Translocase of chloroplast 120, chloroplastic OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC01003B10SK Veg1 Citrus clementina cDNA clone C01003B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286975 ID=CX286975; Name=CX286975; organism=Citrus clementina; type=EST; length=460bp
TGTTCGTTCACCTCCACTTCCATACTTGTTGTCTTGGCTGTTGCAATCTC
GCACACACCCAAAACTCCCCACTGATCAGGGCGGTGATAATGCTGATTCT
GATATTGAATTGGCTGACTTGTCTGATTCTGATCAAGAAGAAGAAGAGGA
TGAATATGATCTGCTTCCACCATTCAAACCTCTGAGGAAAGCTCAAATTG
CTAAGCTTAGTAAGGAACAAAAGAAGGCGTATTTTGAGGAGTATGATTAC
CGGGTGAAACTCCTTCAGAAAAAGCAGTGGAGAGAGGAGTTGAGAAGAAT
GAGAGAGATGAAGAAGAGAGGAAATGCTGCTACTGAAGATTATGGTTATG
TGGGGGAAGATGTTGATCAGGAGAATGGAAGTTCAGCTGCCGTGCCAGTG
CCATTGCCTGATATGGTCTTGCCTCAGTCCTTTGATGGTGATAATCCAGC
TTACAGGTAT
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