CX286977
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX286977 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.127e-14 Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 2 Query: 521 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 643 ++H AGFS+PTPIQAQSWPIALQ RDIVAIAKTGSGKTLGY Sbjct: 159 EMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGY 199
BLAST of CX286977 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 2.027e-13 Identity = 34/41 (82.93%), Postives = 41/41 (100.00%), Query Frame = 2 Query: 521 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 643 +V++AGFS+P+PIQAQSWPIA+Q+RDIVAIAKTGSGKTLGY Sbjct: 175 EVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGY 215
BLAST of CX286977 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.458e-13 Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 2 Query: 521 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 643 ++ AGFSSPTPIQAQSWPIALQ +D+VAIAKTGSGKTLGY Sbjct: 164 EIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGY 204
BLAST of CX286977 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.458e-13 Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 2 Query: 521 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 643 +V AGFS+PTPIQAQSWPIAL++RDIVA+AKTGSGKTLGY Sbjct: 194 EVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGY 234
BLAST of CX286977 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.458e-13 Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 2 Query: 521 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 643 +V +AGFS+PTPIQAQSWPIA+Q RDIVAIAKTGSGKTLGY Sbjct: 172 EVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGY 212 HSP 2 Score: 69.3218 bits (168), Expect = 1.916e-11 Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 Query: 58 EAYRRRHEVTVSGDEVPPPFMSFEATGFPPELLREV 165 EAY RRHE+TVSG +VPPP MSFEATGFPPELLREV Sbjct: 138 EAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREV 173
BLAST of CX286977 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.898e-13 Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 2 Query: 530 NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 643 +AGF SPTPIQAQ+WPIALQSRDIVAIAKTGSGKTLGY Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGY 489 The following BLAST results are available for this feature:
BLAST of CX286977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX286977 ID=CX286977; Name=CX286977; organism=Citrus clementina; type=EST; length=645bpback to top |