CX286977

Overview
NameCX286977
Unique NameCX286977
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286977 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.127e-14
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 2
Query:  521 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 643
            ++H AGFS+PTPIQAQSWPIALQ RDIVAIAKTGSGKTLGY
Sbjct:  159 EMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGY 199          
BLAST of CX286977 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.027e-13
Identity = 34/41 (82.93%), Postives = 41/41 (100.00%), Query Frame = 2
Query:  521 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 643
            +V++AGFS+P+PIQAQSWPIA+Q+RDIVAIAKTGSGKTLGY
Sbjct:  175 EVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGY 215          
BLAST of CX286977 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.458e-13
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 2
Query:  521 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 643
            ++  AGFSSPTPIQAQSWPIALQ +D+VAIAKTGSGKTLGY
Sbjct:  164 EIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGY 204          
BLAST of CX286977 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.458e-13
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 2
Query:  521 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 643
            +V  AGFS+PTPIQAQSWPIAL++RDIVA+AKTGSGKTLGY
Sbjct:  194 EVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGY 234          
BLAST of CX286977 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.458e-13
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 2
Query:  521 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 643
            +V +AGFS+PTPIQAQSWPIA+Q RDIVAIAKTGSGKTLGY
Sbjct:  172 EVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGY 212          

HSP 2 Score: 69.3218 bits (168), Expect = 1.916e-11
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1
Query:   58 EAYRRRHEVTVSGDEVPPPFMSFEATGFPPELLREV 165
            EAY RRHE+TVSG +VPPP MSFEATGFPPELLREV
Sbjct:  138 EAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREV 173          
BLAST of CX286977 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.898e-13
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 2
Query:  530 NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 643
            +AGF SPTPIQAQ+WPIALQSRDIVAIAKTGSGKTLGY
Sbjct:  452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGY 489          
The following BLAST results are available for this feature:
BLAST of CX286977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DB10_NICSY3.127e-1487.80ATP-dependent RNA helicase-like protein DB10 OS=Ni... [more]
RH46_ARATH2.027e-1382.93DEAD-box ATP-dependent RNA helicase 46 OS=Arabidop... [more]
RH40_ORYSJ3.458e-1382.93DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sa... [more]
RH14_ORYSJ3.458e-1382.93DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sa... [more]
RH14_ARATH3.458e-1385.37DEAD-box ATP-dependent RNA helicase 14 OS=Arabidop... [more]
RH40_ARATH5.898e-1392.11DEAD-box ATP-dependent RNA helicase 40 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionC01003B12SK Veg1 Citrus clementina cDNA clone C01003B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286977 ID=CX286977; Name=CX286977; organism=Citrus clementina; type=EST; length=645bp
GGGGGATCGTCCACAAGAGGACATGGATCGTCAGTGGGAGGAATCAGTAT
ATCTTCTGAGGCTTATCGTCGGCGACATGAAGTAACTGTATCAGGTGATG
AAGTGCCCCCTCCTTTTATGTCCTTTGAAGCAACTGGCTTTCCTCCTGAA
CTTCTTAGAGAGGTGCGATATTTGCTCCTCGGAGGAGCTAATGTCGTACG
CTGTGCTGCCCTCTATGGGGGGCCTTGCATATAATTTGGAGCGCCCTTAT
ATGGTGGACCAATTAATGGAAGGGCTTTCCGAATCACCCAAGTTCATGGC
TAGGACTGCTGTTGGTGATGATTTAGTCTACCACTCGGTCCAAACGGAAG
AAGAGGTCTCCTCCTGCTCCAGCTTGCATCAGCAAGCATTGGTCGGCTGC
TTATGGAGGATGATGCTTCTTCTGGCATTAACCATTTCACTATTAATACA
AAAAGAAACCAATCAAAACTGTTGAGGCCAGTGCCTCTGCTCACAGTGGT
TATTGGATTTGTGCTTTTTCCAGGTACACAATGCTGGATTCTCTTCCCCA
ACTCCAATTCAGGCACAGTCATGGCCGATTGCTTTGCAAAGTAGAGATAT
AGTGGCCATTGCAAAGACTGGATCTGGGAAAACATTGGGATATCT
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