CX286987

Overview
NameCX286987
Unique NameCX286987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15148 contig Ccv1_Contig15148:365..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286987 vs. ExPASy Swiss-Prot
Match: CO058_MOUSE (UPF0580 protein C15orf58 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.223e-23
Identity = 69/191 (36.13%), Postives = 99/191 (51.83%), Query Frame = 2
Query:   17 VDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVF---EGGNSLEDLSNTVSDACICLQENNIPYNVLI 580
            +  V Q FD  +FNF K+   EVLF+ +    G     P+ P   +    +V INVSP+E+GHVLL+P   + LPQR+      + L     + +P FR+G+NSLG  A++NHLH   YY+A P P+E AP+  +   G    I  L   P  G +F     G  LE L + V  A   L +  I +N+ +
Sbjct:  112 IRSVRQEFDPEQFNFNKIRPGEVLFRMQREPKG-----PATP--KQEDDVLVVINVSPLEWGHVLLVPAPAQGLPQRLLPGVLRVGLEAVLLSLHPGFRVGFNSLGGLASVNHLHLHCYYLAHPLPVEGAPSTPLDPKGC---IHLLQALPAPGFLFYTSGPGPDLEVLISRVCRATDYLSDREIAHNLFV 292          
BLAST of CX286987 vs. ExPASy Swiss-Prot
Match: CO058_HUMAN (UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf58 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.089e-22
Identity = 65/191 (34.03%), Postives = 98/191 (51.31%), Query Frame = 2
Query:   17 VDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVF---EGGNSLEDLSNTVSDACICLQENNIPYNVLI 580
            +  V Q FD  +FNF K+   EVLF+            P  P  +     +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH   YY+A   P+E+AP++ +     G  +  L + P  G +F     G  LE L + V  A   L ++ I +N+ +
Sbjct:  112 IKSVRQAFDPVQFNFNKIRPGEVLFRLHRE--------PDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARQLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEQAPSEPL---DPGGHLHLLQDLPAPGFLFYTRGPGTDLESLISRVCRATDYLTDHEIAHNLFV 291          
BLAST of CX286987 vs. ExPASy Swiss-Prot
Match: CO058_BOVIN (UPF0580 protein C15orf58 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.079e-22
Identity = 64/191 (33.51%), Postives = 97/191 (50.79%), Query Frame = 2
Query:   17 VDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVF---EGGNSLEDLSNTVSDACICLQENNIPYNVLI 580
            +  V Q FD  +FNF ++   EVLF+    +D            V+    +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH   YY+A   P+E AP++ +   G   ++  L   P  G +F     G  LE L + V  A   L +  I +N+ +
Sbjct:  112 IKSVRQEFDPEQFNFNQIRPGEVLFRLHRKQD--------CSGTVQQEDILVVINVSPLEWGHVLLVPEPARGLPQRLLPGALRAGVEAVLLSSHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEGAPSEPLDPRG---RLHVLQALPAPGFLFYTSRPGPDLEALISRVCRATDYLTDCEIAHNLFV 291          
BLAST of CX286987 vs. ExPASy Swiss-Prot
Match: CO058_DANRE (UPF0580 protein C15orf58 homolog OS=Danio rerio GN=zgc:153343 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 56/185 (30.27%), Postives = 96/185 (51.89%), Query Frame = 2
Query:   26 VLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDACICLQENNIPYNVLI 580
            V Q FD  +FNF K+  +E+LF+ +   + +                 V INVSP+E+GH LL+P   +C PQ +   +    +     + +P FR+G+NSLG FA++NHLH   YY+     IE +P K ++     + + EL+++P   L +  G +L+ +   +      L ++NI +N+ +
Sbjct:   87 VRQNFDPKQFNFNKINPKELLFELKRESERKCS---------------VIINVSPLEFGHCLLVPEPEKCFPQVLTHLAVQTGIETVLLSADPGFRVGFNSLGGFASVNHLHLHGYYLNHRLKIESSPAKLVL---PNLNLYELVDFPSGFLFYTQGPNLDLVVKAICSLTDVLVDHNIAHNLFL 253          
BLAST of CX286987 vs. ExPASy Swiss-Prot
Match: CO058_MACFA (UPF0580 protein C15orf58 homolog OS=Macaca fascicularis GN=QflA-20034 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21
Identity = 64/191 (33.51%), Postives = 96/191 (50.26%), Query Frame = 2
Query:   17 VDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVF---EGGNSLEDLSNTVSDACICLQENNIPYNVLI 580
            +  V Q FD  +FNF K+   EVL++            P  P  +     +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH   YY+A   P+E+AP++ +     G  +  L   P  G +F     G  LE L   V  A   L ++ I +N+ +
Sbjct:  112 IKSVRQAFDPEQFNFNKIQPGEVLYRLHRE--------PDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARGLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEQAPSEPL---DPGGHLHLLQGLPAPGFLFYTRGPGLDLESLICRVCRATDYLTDHEIAHNLFV 291          
BLAST of CX286987 vs. ExPASy Swiss-Prot
Match: CO058_XENTR (UPF0580 protein C15orf58 homolog OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 61/209 (29.19%), Postives = 102/209 (48.80%), Query Frame = 2
Query:   26 VLQPFDGNKFNFTKVGQEEVLFQFEASE-DGEVQFH----------------------PSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVF-EGGNSLEDLSNTVSDACICLQENNIPYNVLI 580
            V Q F+ N+FN+ K+  EE++FQ   SE +  V  H                       S  ++ ++S ++V INVSP+E+GHVL +P    CLPQ +  +  L  +     + +P FR+G+NSLG FA++NHLH   +Y+     IE + +K +      +    + ++P  G +F   G  L+  +  +      L   NI +N+ +
Sbjct:  102 VQQKFNPNQFNYNKIKSEEIVFQMIRSEAEHSVDSHIVQGSMVNGMGSSECKSGSTPQGSCTLECKSSCTLVVINVSPLEFGHVLFMPDPSLCLPQILTENLMLFGMESVFLSSHPGFRVGFNSLGGFASVNHLHLHGFYLDHELLIESSCSKPLCPE---INFHLVTHFPAPGFLFYTDGKDLKSTAQKICKVTDFLVAKNIAHNLFV 307          
BLAST of CX286987 vs. ExPASy Swiss-Prot
Match: CO058_XENLA (UPF0580 protein C15orf58 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 60/209 (28.71%), Postives = 100/209 (47.85%), Query Frame = 2
Query:   26 VLQPFDGNKFNFTKVGQEEVLFQFEASEDGEV----QFHPSAP-------------------IDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVF-EGGNSLEDLSNTVSDACICLQENNIPYNVLI 580
            + Q F+ N+FN+ K+  EE++FQ   SE        + H S+                    ++ +   ++V INVSP+E+GHVL +P    CLPQ +  D  L  L     + +P FR+G+NSLG FA++NHLH   +Y+     IE + +K +      +    + ++P    +F   G +L+  +  +      L   NI +N+ I
Sbjct:  103 IQQKFNPNQFNYNKIKPEEIVFQMIRSETEHCVDSDKVHGSSVNGMGTSDCKSGSTHQRCCILECKGGCTLVVINVSPLEFGHVLFMPDPSLCLPQILTEDLMLFGLESVLLSAHPGFRVGFNSLGGFASVNHLHLHGFYLDHDLFIESSSSKPLCPE---MNFHLITHFPAPSFLFYTDGRNLKSTAQNICKVTDFLVAKNIAHNLFI 308          
The following BLAST results are available for this feature:
BLAST of CX286987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CO058_MOUSE3.223e-2336.13UPF0580 protein C15orf58 homolog OS=Mus musculus P... [more]
CO058_HUMAN2.089e-2234.03UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf... [more]
CO058_BOVIN6.079e-2233.51UPF0580 protein C15orf58 homolog OS=Bos taurus PE=... [more]
CO058_DANRE1.354e-2130.27UPF0580 protein C15orf58 homolog OS=Danio rerio GN... [more]
CO058_MACFA1.769e-2133.51UPF0580 protein C15orf58 homolog OS=Macaca fascicu... [more]
CO058_XENTR3.336e-2029.19UPF0580 protein C15orf58 homolog OS=Xenopus tropic... [more]
CO058_XENLA2.824e-1928.71UPF0580 protein C15orf58 homolog OS=Xenopus laevis... [more]
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Properties
Property NameValue
Genbank descriptionC01003C12SK Veg1 Citrus clementina cDNA clone C01003C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286987 ID=CX286987; Name=CX286987; organism=Citrus clementina; type=EST; length=692bp
GCCTACTGAGTTCCGTGTTGATAAGGTCCTCCAGCCTTTTGATGGGAACA
AGTTCAACTTTACCAAAGTGGGGCAAGAAGAGGTGCTCTTCCAGTTTGAG
GCAAGCGAAGATGGTGAAGTCCAGTTTCACCCAAGTGCCCCCATTGATGT
TGAGAATTCTCCAAGTGTTGTTGCCATCAATGTGAGTCCTATTGAGTACG
GGCATGTGCTGTTGATCCCACGAGTTCTTGAGTGCTTGCCACAGAGGATT
GACCGTGATAGCTTCTTGCTCGCACTTTACATGGCTGCAGAAGCTGGGAA
TCCATACTTCAGGTTGGGTTACAACAGCTTGGGTGCATTTGCTACCATCA
ACCACCTTCACTTCCAGGCTTACTACATGGCCTTGCCTTTTCCAATTGAG
AAGGCTCCTACCAAGAAGATAATCTCTACTGGCAGTGGTGTGAAGATCTC
TGAGCTTTTAAACTATCCAGTCAGAGGCCTCGTCTTTGAAGGTGGAAACT
CTCTGGAAGACTTATCCAACACAGTCTCGGATGCGTGCATTTGCCTTCAA
GAGAACAACATTCCTTACAATGTTCTCATTGCTGATTGTGGAAAGCGCAT
ATTTCTCTTACCACAGTGCTATGCTGAGAAACAAGCTCTTGGGGAAGTGA
GTTCAGAGCTTCTGGACACCCAAGTGAACCCTGCTGTGTGGG
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