CX286990

Overview
NameCX286990
Unique NameCX286990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig102 contig Ccv1_Contig102:102..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286990 vs. ExPASy Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.011e-22
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  137 EAATCSPTELSPCAPAITSSAPPSGACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 346
            EA TC+PTELS C PAIT  + PS  CC+K++ Q PCLC ++++P+LKQYVNSP AK+V++ CG+ YP C
Sbjct:   30 EAVTCNPTELSSCVPAITGGSKPSSTCCSKLKVQEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC 99          
BLAST of CX286990 vs. ExPASy Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.489e-21
Identity = 39/67 (58.21%), Postives = 53/67 (79.10%), Query Frame = 2
Query:  146 TCSPTELSPCAPAITSSAPPSGACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 346
            TCSP +LSPC   I S AP    CC K+R+QRPCLCG+L++P+L+QYVNSPNA+++ + CG+P P+C
Sbjct:    2 TCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQC 68          
BLAST of CX286990 vs. ExPASy Swiss-Prot
Match: NLTP2_HORVU (Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.939e-15
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 2
Query:  143 ATCSPTELSPCAPAITSSAPPSGACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 346
            A C P +L+ CA AI     PSG CC  +R Q+ CLC +++DPN   YV+SP+A+  +  CGIP P C
Sbjct:   35 AACEPAQLAVCASAILGGTKPSGECCGNLRAQQGCLCQYVKDPNYGHYVSSPHARDTLNLCGIPVPHC 102          
BLAST of CX286990 vs. ExPASy Swiss-Prot
Match: NLTP2_MAIZE (Probable non-specific lipid-transfer protein 2 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.728e-14
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  140 AATCSPTELSPCA-PAITSSAPPSGACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 346
            A  C+P +L+PCA PA+   A P  ACC ++R Q+ CLCG+ R PN   Y+ SPNA R+ A C +P PRC
Sbjct:    1 ANPCNPAQLTPCAGPALFGGAVPP-ACCAQLRAQQGCLCGYARSPNYGSYIRSPNAARLFAICNLPMPRC 69          
BLAST of CX286990 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP-2 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.257e-14
Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 2
Query:  143 ATCSPTELSPCAPAITSSAPPSGACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 346
            A+C+  +L+ CA AI   A P+ ACC+ +R Q+ C C F +DP   +YVNSPNA++ +++CGI  P C
Sbjct:   28 ASCNAGQLTVCAGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of CX286990 vs. ExPASy Swiss-Prot
Match: NLT2P_WHEAT (Non-specific lipid-transfer protein 2P OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  149 CSPTELSPCAPAITSSAPPSGACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 346
            C  ++L+ CA AI S A PSG CC  +R Q+PC C + +DP   QY+ SP+A+  + +CG+  P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQPCFCQYAKDPTYGQYIRSPHARDTLQSCGLAVPHC 67          
BLAST of CX286990 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSJ (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica GN=LTP-2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 2
Query:  143 ATCSPTELSPCAPAITSSAPPSGACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 346
            A C+  +L+ C  AI   A P+ ACC+ +R Q+ C C F +DP   +YVNSPNA++ +++CGI  P C
Sbjct:   28 AGCNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of CX286990 vs. ExPASy Swiss-Prot
Match: NLT2G_WHEAT (Non-specific lipid-transfer protein 2G OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.260e-13
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 2
Query:  149 CSPTELSPCAPAITSSAPPSGACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 346
            C  ++L+ CA AI S A PSG CC  +R Q+ C C + +DP   QY+ SP+A+  + +CG+  P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC 67          
The following BLAST results are available for this feature:
BLAST of CX286990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NLTP_VIGUN1.011e-2258.57Probable non-specific lipid-transfer protein AKCS9... [more]
NLTP2_PRUAR2.489e-2158.21Non-specific lipid-transfer protein 2 OS=Prunus ar... [more]
NLTP2_HORVU5.939e-1547.06Probable non-specific lipid-transfer protein OS=Ho... [more]
NLTP2_MAIZE1.728e-1450.00Probable non-specific lipid-transfer protein 2 OS=... [more]
NLTPX_ORYSI2.257e-1445.59Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2P_WHEAT8.576e-1443.94Non-specific lipid-transfer protein 2P OS=Triticum... [more]
NLTPX_ORYSJ1.463e-1344.12Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2G_WHEAT7.260e-1342.42Non-specific lipid-transfer protein 2G OS=Triticum... [more]
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Properties
Property NameValue
Genbank descriptionC01003D03SK Veg1 Citrus clementina cDNA clone C01003D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286990 ID=CX286990; Name=CX286990; organism=Citrus clementina; type=EST; length=550bp
CTCGTGCCAATTCTAGTATATTTTTGTTTTGTGACAATTAGTTTTGATAA
TGAAGAAGGCTCCTTCTGTTGCGGCTGTGGGCTTTGTGGTGGCGCTGCTG
GTGGCTGTGGCGGCACTAAGCCAAGTTAATGTGGCAGAGGCAGCGACATG
CAGCCCTACGGAGCTGAGCCCATGTGCGCCAGCAATCACATCGTCGGCAC
CGCCGTCGGGAGCATGCTGCAACAAGATGAGGCAGCAGAGGCCATGCCTT
TGTGGATTCCTGAGGGACCCTAACCTGAAGCAATATGTTAACTCTCCCAA
TGCTAAAAGGGTTATTGCTACCTGCGGAATTCCCTATCCTCGGTGTTAGG
GTTAATAATACGCCTTGTTTAATTAGTGCTTAAAAGGAGGGCGTTACTAA
ATAAAATCTTGAGAGGTGCATGGTTTTGTTGGCATTAGTTTACTAAGTGA
AGCTATGAAAAAATATATGAATAGCAATATGTGCGAATATGAGGTTAATT
AATAAAATTAAATAATAAGTTGTGGTTGTTGTAAAAAAAAAAAAAAAAAA
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