CX286996

Overview
NameCX286996
Unique NameCX286996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286996_ssr1 microsatellite CX286996_ssr1:1..70. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig17 contig Ccv1_Contig17:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286996 vs. ExPASy Swiss-Prot
Match: CRD1_EUPES (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Euphorbia esula GN=CRD1 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.010e-54
Identity = 116/163 (71.17%), Postives = 122/163 (74.85%), Query Frame = 3
Query:  141 MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIXXXXXXXXXXXXXXXXXXXXXNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 629
            MAAEMALVKPI+          P+F  P  T +S S++F TI                     NK  I ETLLTPRFYTTDFDEMETLFNTEINKKLNQ+EFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR
Sbjct:    1 MAAEMALVKPIT----------PKFINPMRTFSS-SSKFSTIKMSATSQSNTTTTATKPSKKGNKKEINETLLTPRFYTTDFDEMETLFNTEINKKLNQSEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 152          
BLAST of CX286996 vs. ExPASy Swiss-Prot
Match: CRD1_GOSHI (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Gossypium hirsutum GN=CRD1 PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 6.130e-52
Identity = 112/167 (67.07%), Postives = 121/167 (72.46%), Query Frame = 3
Query:  141 MAAEMALVKPISKFST----IATTTKPRFSYPKATCTSLSTRFCTIXXXXXXXXXXXXXXXXXXXXXNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 629
            MA EMALVKPISKFST     + +   +F+  + + TS ST                           KTAIKETLLTPRFYTTDFDEME LFNTEINK LNQ+EFE+LLQEFKTDYNQTHFVRNKEFKEAADK+ GPLRQIFVEF ERSCTAEFSGFLLYKELGRR
Sbjct:    1 MATEMALVKPISKFSTSSPIFSNSRYGKFTTVRMSSTSQSTTKAAAKGGKKAA---------------KTAIKETLLTPRFYTTDFDEMEALFNTEINKNLNQSEFESLLQEFKTDYNQTHFVRNKEFKEAADKIDGPLRQIFVEFSERSCTAEFSGFLLYKELGRR 152          
BLAST of CX286996 vs. ExPASy Swiss-Prot
Match: CRD1_ARATH (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Arabidopsis thaliana GN=CRD1 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 2.329e-51
Identity = 112/164 (68.29%), Postives = 120/164 (73.17%), Query Frame = 3
Query:  141 MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCT-IXXXXXXXXXXXXXXXXXXXXXNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 629
            MAAEMALVKPISKFS+      P+ S P    +    RF T I                      K  I+E+LLTPRFYTTDF+EME LFNTEINK LN+AEFEALLQEFKTDYNQTHFVRNKEFKEAADK+QGPLRQIFVEFLERSCTAEFSGFLLYKELGRR
Sbjct:    1 MAAEMALVKPISKFSS------PKLSNPSKFLSG--RRFSTVIRMSASSSPPPPTTATSKSKKGTKKEIQESLLTPRFYTTDFEEMEQLFNTEINKNLNEAEFEALLQEFKTDYNQTHFVRNKEFKEAADKLQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 156          
BLAST of CX286996 vs. ExPASy Swiss-Prot
Match: CRD1_HORVU (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Hordeum vulgare GN=CRD1 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.564e-46
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 3
Query:  333 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 629
            KT + E+LLTPRFYTTDFDEME LFN EINK+LNQ EF+ALLQEFKTDYNQTHF+RN EFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR
Sbjct:   66 KTEVNESLLTPRFYTTDFDEMEQLFNAEINKQLNQDEFDALLQEFKTDYNQTHFIRNPEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 164          
BLAST of CX286996 vs. ExPASy Swiss-Prot
Match: CTH1_CHLRE (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 2, chloroplastic OS=Chlamydomonas reinhardtii GN=CTH1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.556e-39
Identity = 76/99 (76.77%), Postives = 86/99 (86.87%), Query Frame = 3
Query:  333 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 629
            K A  ETLLTPRFYTTDFDEME LF+ E+NK ++  EFEA+L EFK DYNQ HFVRN+ FKEAA+K+QGP R+IF+EFLERSCTAEFSGFLLYKELGRR
Sbjct:   56 KVASDETLLTPRFYTTDFDEMERLFSLELNKNMDMEEFEAMLNEFKLDYNQRHFVRNETFKEAAEKIQGPTRKIFIEFLERSCTAEFSGFLLYKELGRR 154          
BLAST of CX286996 vs. ExPASy Swiss-Prot
Match: CRD1_CHLRE (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=CRD1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.809e-35
Identity = 71/99 (71.72%), Postives = 79/99 (79.80%), Query Frame = 3
Query:  333 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 629
            K A KETLLTPRFYTTDFDEME LF+ EIN  L+  E  A L EF+ DYN+ HFVRN+ FK AADK+ G  R+IF+EFLERSCTAEFSGFLLYKEL RR
Sbjct:   56 KVAAKETLLTPRFYTTDFDEMEQLFSKEINPNLDMEELNACLNEFRNDYNKVHFVRNETFKAAADKVTGETRRIFIEFLERSCTAEFSGFLLYKELARR 154          
BLAST of CX286996 vs. ExPASy Swiss-Prot
Match: ACSF1_SYNY3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1 OS=Synechocystis sp. (strain PCC 6803) GN=acsF1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.523e-29
Identity = 62/99 (62.63%), Postives = 76/99 (76.77%), Query Frame = 3
Query:  333 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 629
            KT  KET+LTPRFYTTDFDEM      +++   N+ E  A+L+EF+ DYN+ HFVRN+ F ++ D + G  RQ+FVEFLERSCTAEFSGFLLYKELGRR
Sbjct:   18 KTPAKETILTPRFYTTDFDEM-----AKMDISPNEDELRAILEEFRVDYNRHHFVRNESFNKSWDHIDGEKRQLFVEFLERSCTAEFSGFLLYKELGRR 111          
BLAST of CX286996 vs. ExPASy Swiss-Prot
Match: ACSF_TRIEI (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Trichodesmium erythraeum (strain IMS101) GN=acsF PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.244e-28
Identity = 61/99 (61.62%), Postives = 77/99 (77.78%), Query Frame = 3
Query:  333 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 629
            K   KET+LTPRFYTTDFDEM      +++  +N+ E  A+L+EF+ DYN+ HFVRN+EF ++ D + G  R++FVEFLERSCTAEFSGFLLYKELGRR
Sbjct:   18 KVPAKETILTPRFYTTDFDEM-----AKMDISVNEDELMAILEEFRADYNRHHFVRNEEFAQSWDHIDGETRRLFVEFLERSCTAEFSGFLLYKELGRR 111          
BLAST of CX286996 vs. ExPASy Swiss-Prot
Match: ACSF3_ANASP (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 3 OS=Anabaena sp. (strain PCC 7120) GN=acsF3 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.624e-28
Identity = 62/99 (62.63%), Postives = 77/99 (77.78%), Query Frame = 3
Query:  333 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 629
            K   KETLLTPRFYTTDFDEM       ++  +N+ E  A+L+EF+TDYN+ HFVR+ EF+++ D + G  R++FVEFLERSCTAEFSGFLLYKELGRR
Sbjct:   18 KVPAKETLLTPRFYTTDFDEM-----ARMDISVNEDELLAILEEFRTDYNRHHFVRDAEFEKSWDHIDGDTRRLFVEFLERSCTAEFSGFLLYKELGRR 111          
BLAST of CX286996 vs. ExPASy Swiss-Prot
Match: ACSF1_THEEB (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=acsF1 PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.726e-28
Identity = 60/99 (60.61%), Postives = 77/99 (77.78%), Query Frame = 3
Query:  333 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 629
            K   KET+LTPRFYTTDF+ M  +  TE     N+AE EA+L+EF+ DYN+ HFVR++EF+++ D + G  R++F+EFLERSCTAEFSGFLLYKEL RR
Sbjct:   18 KAPAKETILTPRFYTTDFEAMANMDITE-----NKAELEAILEEFRCDYNRHHFVRDEEFEQSWDHIDGETRRLFIEFLERSCTAEFSGFLLYKELSRR 111          
The following BLAST results are available for this feature:
BLAST of CX286996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CRD1_EUPES1.010e-5471.17Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_GOSHI6.130e-5267.07Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_ARATH2.329e-5168.29Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_HORVU6.564e-4688.89Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CTH1_CHLRE4.556e-3976.77Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_CHLRE6.809e-3571.72Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF1_SYNY39.523e-2962.63Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_TRIEI1.244e-2861.62Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF3_ANASP1.624e-2862.63Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF1_THEEB4.726e-2860.61Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]

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Properties
Property NameValue
Genbank descriptionC01003D10SK Veg1 Citrus clementina cDNA clone C01003D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286996 ID=CX286996; Name=CX286996; organism=Citrus clementina; type=EST; length=630bp
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGCCTCGTGCCGAATTCGGCACGAGGTTGAAA
GCCACTCAGTTACTCTCTAGTTCCTCTCCTGGTTCCAGAAATGGCAGCTG
AGATGGCACTGGTCAAACCGATTAGCAAATTCAGCACCATCGCCACCACT
ACTAAGCCTAGGTTCAGCTACCCGAAAGCAACATGTACATCTCTGAGCAC
AAGATTTTGTACAATCAAAATGTCAGCAACTTCAGAGCAAGCGGCTGCTG
CCACTGCCCAAAAGCCAAGCAAGAAATCAAACAAAACTGCTATCAAGGAG
ACCCTTCTGACACCAAGGTTTTATACAACAGATTTTGATGAAATGGAGAC
CCTTTTCAACACTGAGATCAACAAGAAGCTCAACCAGGCTGAATTTGAGG
CATTGCTTCAAGAATTCAAGACTGATTATAACCAGACTCACTTTGTGAGG
AACAAGGAGTTCAAGGAAGCTGCTGACAAGATGCAAGGCCCTCTCAGGCA
GATCTTTGTTGAGTTCTTGGAGAGGTCTTGCACTGCTGAGTTCTCTGGTT
TCCTTCTTTACAAAGAGCTCGGAAGGAGAC
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