CX286998

Overview
NameCX286998
Unique NameCX286998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig18 contig Ccv1_Contig18:1..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.689e-41
Identity = 94/162 (58.02%), Postives = 104/162 (64.20%), Query Frame = 1
Query:  121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVTSNVTASNANSDTYGQAASNLVAGNDLEQTIQQIMD 606
            MKLTVKTLKGSHFEIRV P+DT+MAVKKNIED Q KDNYPCGQQLLIHNGKVLKDETTL +NKV+E+GFLVVMLSKSKT  SAG                                        N T       A SDTYGQAAS LV+G+ +EQ +QQIM+
Sbjct:    1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASSAG-------PSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIME 155          
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.022e-40
Identity = 95/165 (57.58%), Postives = 107/165 (64.85%), Query Frame = 1
Query:  121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVTSNVTASN---ANSDTYGQAASNLVAGNDLEQTIQQIMD 606
            MKLTVKTLKGSHFEIRV PSDT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L +NKV+E+GFLVVMLSKSK+ GSAG                                           S + A     A +DTYGQAAS LV+G+ LEQ +QQIM+
Sbjct:    1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVP--------ASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIME 157          
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.528e-25
Identity = 69/162 (42.59%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVTSNVTASNANSDTYGQAASNLVAGNDLEQTIQQIMD 606
            MK+ VKTL GS+FEI V+P+D V  VK  IE V+G + YP  +Q+LIH GKVLKDETTL +N V E+ F+V+MLSK+K    A                                            +  TA++  +D YGQAASNLVAG  LE T+QQI+D
Sbjct:    1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTK----ASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILD 157          
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24
Identity = 52/83 (62.65%), Postives = 68/83 (81.93%), Query Frame = 1
Query:  121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSA 369
            MK+ VKTLKG+HFEI V+P D+V+ VKKNIE VQG D YP  +Q+LIH GKVLKDETT+ +NKV+E+ F+V+M++KSK   +A
Sbjct:    1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPASAA 83          
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.255e-22
Identity = 68/169 (40.24%), Postives = 88/169 (52.07%), Query Frame = 1
Query:  121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVTSNVTAS-------NANSDTYGQAASNLVAGNDLEQTIQQIMD 606
            MK++VKTLKGS F+I V  +  V  VK+ IE  QG+  YP  QQ+LIH GKVLKD+TTL +NKV E+ FLV+ML + K  GS+                                           T   TAS       ++ +D YGQA SNLVAG++LE TIQ I++
Sbjct:    1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGK--GSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILE 167          
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSA 369
            M++T+KTL+   F+I + P +TV A+K+ IE  +GKD +P   Q LI+ GK+L D+T L + K+ E  F+VVM++K K + SA
Sbjct:    1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVTSA 83          
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSA 369
            M++T+KTL+   F+I + P +TV A+K+ IE  +GKD +P   Q LI+ GK+L D+T L + K+ E  F+VVM++K K + +A
Sbjct:    1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVTTA 83          
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 35/82 (42.68%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 366
            M++T+KTL+   F+I + P +TV A+K+ IE  +GKD +P   Q LI+ GK+L D+T L + K+ E  F+VVM++K K + +
Sbjct:    1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 82          
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.901e-13
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 360
            M +T+KTL+   F+I + P +TV A+K+ IE  +GKD +P   Q LI+ GK+L D+T L + K+ E  F+VVM++K K +
Sbjct:    1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80          
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 32/77 (41.56%), Postives = 54/77 (70.13%), Query Frame = 1
Query:  127 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 357
            +T+KTL+   F+IR++P +TV  +K+ IE  +G+D +P   Q LI+ GK+L D+  + D ++ E  F+VVM++K+KT
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKT 81          
The following BLAST results are available for this feature:
BLAST of CX286998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RD23B_ARATH2.689e-4158.02Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23A_ARATH1.022e-4057.58Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23D_ARATH3.528e-2542.59Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH2.287e-2462.65Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RAD23_ORYSJ1.255e-2240.24Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23B_RAT6.241e-1444.58UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE1.390e-1343.37UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23B_HUMAN2.372e-1342.68UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN6.901e-1343.75UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23A_BOVIN2.622e-1241.56UV excision repair protein RAD23 homolog A OS=Bos ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01003D12SK Veg1 Citrus clementina cDNA clone C01003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286998 ID=CX286998; Name=CX286998; organism=Citrus clementina; type=EST; length=608bp
CGGCACGAGGGTCGTTTCCTCAAAAACTCGTAAAGCGTTTGTCTAGGGCT
CTCTTCTTCTCCGCCATAAATTCAAAAAACGCTGTCGTTTCGATCCCTTT
CTTCGACCTAATTCATCGAAATGAAGCTCACCGTTAAGACTCTCAAAGGC
AGCCATTTCGAGATTAGGGTTCAGCCCTCCGATACGGTTATGGCTGTGAA
GAAGAATATAGAAGATGTGCAAGGAAAAGACAATTACCCATGTGGGCAAC
AGCTGTTGATTCACAATGGGAAGGTCTTGAAAGATGAGACTACTCTAGCT
GATAATAAGGTCTCTGAAGATGGTTTTCTCGTTGTCATGCTCAGCAAGAG
TAAAACACTAGGCTCGGCTGGGGCTTCCTCTGCTCAGCCTGCTCATACTA
CTCCACCAACAACGGCACCAAGCTCTAATTCTACTCCTCCACAGGAAGCA
TCTGTACCGCCACCGGCTCCGACCCCTAGCATACCAGCCTCCAATGTGAC
CTCTAATGTGACAGCATCTAATGCAAATAGTGACACCTACGGTCAAGCTG
CTTCAAATTTAGTTGCTGGTAATGATCTTGAGCAGACCATTCAACAAATA
ATGGATAT
back to top