CX287003

Overview
NameCX287003
Unique NameCX287003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287003_ssr412 microsatellite CX287003_ssr412:412..426. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14767 contig Ccv1_Contig14767:82..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287003 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 335.495 bits (859), Expect = 1.483e-91
Identity = 169/219 (77.17%), Postives = 178/219 (81.28%), Query Frame = 2
Query:    5 MAMKRVASSAINAFAXXXXXXXXXXXXXXXXXXXXKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPF 661
            MAM RVAS+A  A                      KKIVGVFYK NEYA MNPNFLGC E   G+REWLESKGHQYIVT DKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAG+GSDH+DL      GLTVAEVTGSN VSVAEDELMRILILVRNFLPGHHQVI+GEWNVA +A+RA+DLEGKTVGTVG GRIG+LLLQRLKPF
Sbjct:    1 MAMSRVASTAARAITSPSSLVFTRELQASPGP---KKIVGVFYKANEYAEMNPNFLGCAENALGIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPF 216          
BLAST of CX287003 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 9.611e-91
Identity = 163/219 (74.43%), Postives = 181/219 (82.65%), Query Frame = 2
Query:    5 MAMKRVASSAINAFAXXXXXXXXXXXXXXXXXXXXKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPF 661
            MAM++ A + I A +                    KKIVGVFYK NEYA+ NPNFLGCVE   G+R+WLES+GHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNL+LLLTAG+GSDHIDL      GLTVAEVTGSNVVSVAEDELMRILIL+RNF+PG++QV+ GEWNVAG+AYRA+DLEGKT+GTVG GRIGKLLLQRLKPF
Sbjct:    1 MAMRQAAKATIRACSSSSSSGYFARRQFNASSGDSKKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPF 219          
BLAST of CX287003 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 1.344e-84
Identity = 151/184 (82.07%), Postives = 165/184 (89.67%), Query Frame = 2
Query:  110 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPF 661
            KKIVGVFYKG EYA  NPNF+GCVEG  G+REWLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYV+AERIKKAKNL+LLLTAG+GSDHIDL      GLTVAEVTGSN VSVAEDELMRILIL+RNFLPG+ QV+ GEWNVAG+AYRA+DLEGKTVGTVG GRIG+LLLQRLKPF
Sbjct:   28 KKIVGVFYKGGEYADKNPNFVGCVEGALGIREWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNTVSVAEDELMRILILLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPF 211          
BLAST of CX287003 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 5.108e-84
Identity = 145/184 (78.80%), Postives = 165/184 (89.67%), Query Frame = 2
Query:  110 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPF 661
            KK+VGVFYKG EYA  NPNF+GCV+   G+R WLESKGH+YIVTDDKEG +CELEKHI D HVLI+TPFHPAY+TAERIKKAKNL+LLLTAGVGSDHIDL      GLTVAE+TGSN VSVAED+LMRIL+L+RNFLPGHHQ+++GEWNVAG+A+R +DLEGKTVGTVG GRIG+LLLQRLKPF
Sbjct:   30 KKVVGVFYKGGEYADKNPNFVGCVDSALGIRGWLESKGHRYIVTDDKEGINCELEKHIEDAHVLITTPFHPAYITAERIKKAKNLELLLTAGVGSDHIDLPAAAAAGLTVAEITGSNTVSVAEDQLMRILLLLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRIGRLLLQRLKPF 213          
BLAST of CX287003 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 5.844e-80
Identity = 143/184 (77.72%), Postives = 160/184 (86.96%), Query Frame = 2
Query:  110 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPF 661
            KKIVGVFY+  EYA  NPNF+GCVEG  G+R+WLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYVTAE+IKKAK  +LLLTAG+GSDHIDL      GLTVA VTGSN VSVAEDELMRILIL+RNFLPG+ QV+ GEWNVAG+A+RA+DLEGKTVGTVG GR G+LLLQRLKPF
Sbjct:   29 KKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGFNSELEKHIEDMHVLITTPFHPAYVTAEKIKKAKTPELLLTAGIGSDHIDLPAAAAAGLTVARVTGSNTVSVAEDELMRILILLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVGTVGAGRYGRLLLQRLKPF 212          
BLAST of CX287003 vs. ExPASy Swiss-Prot
Match: FDH_EMENI (Probable formate dehydrogenase OS=Emericella nidulans GN=aciA PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 6.090e-53
Identity = 100/181 (55.25%), Postives = 129/181 (71.27%), Query Frame = 2
Query:  125 VFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLN--XXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPF 661
            V Y G  +A   P  LG  E   G+R+W+E +GH  + T DK+G +   +K + D  V+I+TPFHP Y+TAER+ KAKNL+L +TAG+GSDH+DL+       G+TVAEVTGSNVVSVAE  +M IL+LVRNF+P H Q+ +G+WNVA VA    DLE K VGTVG GRIG+ +L+RLKPF
Sbjct:    2 VLYDGGSHAKDQPGLLGTTENELGIRKWIEEQGHTLVTTSDKDGENSTFDKELVDAEVIITTPFHPGYLTAERLAKAKNLKLAVTAGIGSDHVDLDAANKTNGGITVAEVTGSNVVSVAEHVVMTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRIGERVLRRLKPF 182          
BLAST of CX287003 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.039e-52
Identity = 99/185 (53.51%), Postives = 130/185 (70.27%), Query Frame = 2
Query:  113 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLN--XXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPF 661
            K++ V Y G ++    P  LG ++   GLR+WLE +GH  + T DK+G +   +K + D  ++I+TPFHP Y+TAER+ +AK L+L +TAG+GSDH+DLN       G+TVAEVTGSNVVSVAE  LM IL+LVRNF+P H Q+  G W+VA  A    DLEGK VGTVG GRIG+ +L+RLKPF
Sbjct:    3 KVLAVLYDGGKHGEEVPELLGTIQNELGLRKWLEDQGHTLVTTCDKDGENSTFDKELEDAEIIITTPFHPGYLTAERLARAKKLKLAVTAGIGSDHVDLNAANKTNGGITVAEVTGSNVVSVAEHVLMTILVLVRNFVPAHEQIQEGRWDVAEAAKNEFDLEGKVVGTVGVGRIGERVLRRLKPF 187          
BLAST of CX287003 vs. ExPASy Swiss-Prot
Match: FDH_PICAN (Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.357e-52
Identity = 102/185 (55.14%), Postives = 130/185 (70.27%), Query Frame = 2
Query:  113 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXG--LTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPF 661
            K+V V Y   ++A       GC E   G+R+WLE +GH  +VT DKEG +  LEK+I D  V+ISTPFHPAY+T ERI KAK L+LL+ AGVGSDHIDL+     G  ++V EVTGSNVVSVAE  +M +L+LVRNF+P H Q+ISG WNVA +A  + D+EGK + T+G GRIG  +L+RL  F
Sbjct:    2 KVVLVLYDAGKHAQDEERLYGCTENALGIRDWLEKQGHDVVVTSDKEGQNSVLEKNISDADVIISTPFHPAYITKERIDKAKKLKLLVVAGVGSDHIDLDYINQSGRDISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIISGGWNVAEIAKDSFDIEGKVIATIGAGRIGYRVLERLVAF 186          
BLAST of CX287003 vs. ExPASy Swiss-Prot
Match: FDH2_YEAST (Formate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=FDH2 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.776e-44
Identity = 86/184 (46.74%), Postives = 125/184 (67.93%), Query Frame = 2
Query:  113 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEG-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPF 661
            K++ V Y+G ++A      LGC+E   G+R ++E +G++ + T DK+  P   +++ + D  ++I+TPF PAY++  RI +A NL+L +TAGVGSDH+DL       +TV EVTGSNVVSVAE  +  IL+L+RN+  GH Q I+GEW++AGVA   +DLE K + TVG GRIG  +L+RL  F
Sbjct:    5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKDAEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLEAANERKITVTEVTGSNVVSVAEHVMATILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRIGYRVLERLVAF 188          
BLAST of CX287003 vs. ExPASy Swiss-Prot
Match: FDH1_YEAST (Formate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=FDH1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.776e-44
Identity = 86/184 (46.74%), Postives = 125/184 (67.93%), Query Frame = 2
Query:  113 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEG-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLKPF 661
            K++ V Y+G ++A      LGC+E   G+R ++E +G++ + T DK+  P   +++ + D  ++I+TPF PAY++  RI +A NL+L +TAGVGSDH+DL       +TV EVTGSNVVSVAE  +  IL+L+RN+  GH Q I+GEW++AGVA   +DLE K + TVG GRIG  +L+RL  F
Sbjct:    5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKDAEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLEAANERKITVTEVTGSNVVSVAEHVMATILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRIGYRVLERLVAF 188          
The following BLAST results are available for this feature:
BLAST of CX287003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
FDH_SOLTU1.483e-9177.17Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
FDH_ARATH9.611e-9174.43Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
FDH1_ORYSJ1.344e-8482.07Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
FDH2_ORYSJ5.108e-8478.80Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
FDH_HORVU5.844e-8077.72Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH_EMENI6.090e-5355.25Probable formate dehydrogenase OS=Emericella nidul... [more]
FDH_NEUCR1.039e-5253.51Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]
FDH_PICAN1.357e-5255.14Formate dehydrogenase OS=Pichia angusta GN=FMDH PE... [more]
FDH2_YEAST1.776e-4446.74Formate dehydrogenase 2 OS=Saccharomyces cerevisia... [more]
FDH1_YEAST1.776e-4446.74Formate dehydrogenase 1 OS=Saccharomyces cerevisia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01003E06SK Veg1 Citrus clementina cDNA clone C01003E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287003 ID=CX287003; Name=CX287003; organism=Citrus clementina; type=EST; length=663bp
GGAGATGGCCATGAAGAGAGTAGCTAGCTCTGCAATTAACGCTTTTGCTT
CGTCGGGATATCTTCGTTCATCGTCGAGGTTTTCTCGACACTATGCTTCT
TCTGGAAGTAAGAAGATTGTTGGGGTGTTCTACAAGGGCAATGAATACGC
TTCAATGAATCCCAACTTTCTTGGTTGTGTGGAGGGAGGCTGTGGTCTGC
GTGAATGGCTGGAATCGAAAGGTCACCAATATATTGTCACTGATGACAAA
GAGGGACCAGACTGTGAACTAGAGAAACATATTCCTGATCTCCACGTCCT
CATATCTACCCCCTTCCACCCTGCCTATGTTACGGCGGAAAGGATTAAGA
AGGCCAAAAATTTGCAACTGCTTCTCACTGCTGGAGTTGGCTCTGATCAT
ATTGATCTAAATGCTGCTGCTGCTGCTGGTTTAACTGTTGCTGAAGTTAC
TGGAAGCAATGTGGTTTCAGTTGCTGAGGACGAGCTTATGAGAATCCTTA
TTCTTGTCCGTAATTTCTTACCTGGACACCATCAAGTTATCAGTGGGGAA
TGGAATGTTGCCGGTGTTGCTTATAGAGCTCATGATCTTGAAGGAAAGAC
AGTGGGAACTGTTGGTTGTGGACGCATTGGCAAGCTGTTGCTCCAACGAC
TTAAACCTTTCAA
back to top