CX287059

Overview
NameCX287059
Unique NameCX287059
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length315
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig498 contig Ccv1_Contig498:237..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.097e-38
Identity = 74/104 (71.15%), Postives = 84/104 (80.77%), Query Frame = 2
Query:    2 DPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSLVF 313
            DP+NVLQSWDPTLVNPCTWFH+TCN +N V R+DLGN+ LSG LVPELG L++LQYLELY NNI G IP  LGNL +L+SLDLY N+ SG IP SL KL  L F
Sbjct:   42 DPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRF 145          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 1.433e-38
Identity = 73/104 (70.19%), Postives = 86/104 (82.69%), Query Frame = 2
Query:    2 DPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSLVF 313
            DP+ VLQSWD TLV PCTWFH+TCN DN VTR+DLGN+NLSG+LV +LG+L +LQYLELY NNI GTIP +LGNL  L+SLDLY NN+SG IP +L +LK L F
Sbjct:   41 DPNKVLQSWDATLVTPCTWFHVTCNSDNSVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRF 144          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.444e-38
Identity = 71/104 (68.27%), Postives = 88/104 (84.62%), Query Frame = 2
Query:    2 DPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSLVF 313
            DP+NVLQSWDPTLVNPCTWFH+TCN +N V R+DLGN++LSG+LVP+LG+L++LQYLELY NNI G +P +LGNL +L+SLDLY N+ +G IP SL KL  L F
Sbjct:   45 DPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNADLSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRF 148          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 7.864e-37
Identity = 73/105 (69.52%), Postives = 86/105 (81.90%), Query Frame = 2
Query:    2 DP-DNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSLVF 313
            DP +NVLQSWD TLV PCTWFH+TCN +N+VTR+DLGN+ LSG+LVPELG+L +LQYLELY NNI G IP ELG+L  L+SLDLY N++SG IP SL KL  L F
Sbjct:   47 DPANNVLQSWDATLVTPCTWFHVTCNPENKVTRVDLGNAKLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGKLRF 151          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.388e-33
Identity = 65/102 (63.73%), Postives = 81/102 (79.41%), Query Frame = 2
Query:    8 DNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSLVF 313
            +N+LQSW+ T V PC+WFH+TCN +N VTRLDLG++NLSG LVP+L +L +LQYLEL+ NNI G IP ELG+L  L+SLDL+ NN+SG IP SL KL  L F
Sbjct:   45 NNILQSWNATHVTPCSWFHVTCNTENSVTRLDLGSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLGKLRF 146          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.541e-19
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 2
Query:   11 NVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSLVF 313
            N L  W+   VNPCTW  + C+  N VT L L + N SG L   +G LE+L+ L L  N I G IP + GNL SL SLDL +N ++G+IP ++  LK L F
Sbjct:   46 NQLSDWNQNQVNPCTWSQVICDDKNFVTSLTLSDMNFSGTLSSRVGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQF 146          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.068e-17
Identity = 46/103 (44.66%), Postives = 59/103 (57.28%), Query Frame = 2
Query:    5 PDNVLQSW--DPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSL 307
            P  V  +W  + +   PC WF ITC+    V  L+   S +SG+L PE+G+L+ LQ L+L  NN  GTIP  LGN   L +LDL  N  S KIP +L  LK L
Sbjct:   47 PPQVTSTWKINASEATPCNWFGITCDDSKNVASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRL 149          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.395e-17
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = 2
Query:    2 DPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSLVF 313
            DP  V ++WD   V+PC+W  I+C+ DN V  L   + +LSG L   +G L +L+ + L  NNI G IP E+ +L  L +LDL NN  SG+IP S+ +L +L +
Sbjct:   47 DPHGVFKNWDEFSVDPCSWTMISCSSDNLVIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNISGKIPPEICSLPKLQTLDLSNNRFSGEIPGSVNQLSNLQY 150          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: Y1341_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.299e-17
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 2
Query:   11 NVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSLVF 313
            ++  SWDP    PC+W+ ITC+ DNRV  + + ++ L+   +P+L  L  LQ+L L   N+ G IP   G L  L  LDL +N++SG IP  L +L +L F
Sbjct:   43 SLFSSWDPQDQTPCSWYGITCSADNRVISVSIPDTFLNLSSIPDLSSLSSLQFLNLSSTNLSGPIPPSFGKLTHLRLLDLSSNSLSGPIPSELGRLSTLQF 143          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.014e-16
Identity = 44/102 (43.14%), Postives = 56/102 (54.90%), Query Frame = 2
Query:    2 DPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSL 307
            D   VL  WD   V+PCTW  + C+ +  V  L++ +  LSG L   +G+L HL  L L  N + G IP ELG L  L +LDL  N  SG+IP SL  L  L
Sbjct:   52 DEKEVLSGWDINSVDPCTWNMVGCSSEGFVVSLEMASKGLSGILSTSIGELTHLHTLLLQNNQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLGFLTHL 153          
The following BLAST results are available for this feature:
BLAST of CX287059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SERK1_ARATH1.097e-3871.15Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
BAK1_ARATH1.433e-3870.19BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
SERK2_ARATH2.444e-3868.27Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
SERK4_ARATH7.864e-3769.52Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
SERK5_ARATH1.388e-3363.73Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
Y5129_ARATH2.541e-1946.53Probable LRR receptor-like serine/threonine-protei... [more]
PEPR1_ARATH1.068e-1744.66Leucine-rich repeat receptor-like protein kinase P... [more]
Y2239_ARATH1.395e-1742.31Probable LRR receptor-like serine/threonine-protei... [more]
Y1341_ARATH5.299e-1740.59Probable LRR receptor-like serine/threonine-protei... [more]
Y5457_ARATH2.014e-1643.14Probable LRR receptor-like serine/threonine-protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01004B12SK Veg1 Citrus clementina cDNA clone C01004B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287059 ID=CX287059; Name=CX287059; organism=Citrus clementina; type=EST; length=315bp
AGATCCCGATAACGTGCTTCAGAGCTGGGATCCAACTCTCGTCAATCCCT
GCACTTGGTTTCACATAACCTGTAATCAGGACAACCGCGTTACCCGACTG
GATTTGGGTAATTCAAATCTATCCGGCCGTCTCGTCCCTGAACTGGGCAA
GCTCGAGCATTTGCAATACCTGGAACTTTACAAAAACAACATCCAAGGAA
CTATCCCTGTCGAGCTCGGTAACTTGAAGAGCCTCATCAGCTTGGACTTG
TATAATAACAACGTCTCGGGGAAAATCCCTCCTTCCTTGGCTAAATTGAA
ATCTCTTGTTTTTTT
back to top