CX287060

Overview
NameCX287060
Unique NameCX287060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig157 contig Ccv1_Contig157:107..397. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.556e-48
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIA EAVKK+RR TKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK
Sbjct:   30 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 126          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.122e-46
Identity = 91/97 (93.81%), Postives = 94/97 (96.91%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            VFLF NSKCKRYFHNRLKPSKLTWTAM+RKQHKKD A EAVKK+RRATKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREIKERIKKTKDEK
Sbjct:   30 VFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEK 126          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.620e-45
Identity = 89/97 (91.75%), Postives = 92/97 (94.85%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            VFLFANSKCKRYFHNRLKP+KL WTAMYRKQHKKDI AEA KK+RR TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKDEK
Sbjct:   30 VFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEK 126          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 3.610e-45
Identity = 88/97 (90.72%), Postives = 92/97 (94.85%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            VFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD A EAVK++RRATKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKDEK
Sbjct:   30 VFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEK 126          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 4.715e-45
Identity = 88/97 (90.72%), Postives = 92/97 (94.85%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            VFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD A EAVK++RRATKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKDEK
Sbjct:   30 VFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEK 126          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24B_SCHPO (60S ribosomal protein L24-B OS=Schizosaccharomyces pombe GN=rpl24b PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.913e-18
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            VF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL++ K++   ++ EK
Sbjct:   28 VFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDKRAASESEK 123          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24A_SCHPO (60S ribosomal protein L24-A OS=Schizosaccharomyces pombe GN=rpl24a PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.913e-18
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            VF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL++ K++   ++ EK
Sbjct:   28 VFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDKKAASESEK 123          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_NEUCR (60S ribosomal protein L24 OS=Neurospora crassa GN=rpl-24 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.417e-18
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            +F F N K +  F  R  P ++ WT +YR+QHKK I+ E  KK+ R T K   R+IVGA+LEVI++RR+ +PE R AAR AA++E K + ++T+  K
Sbjct:   28 IFRFQNGKSESLFLQRKNPRRIAWTVLYRRQHKKGISEEVAKKRSRRTVKA-QRAIVGASLEVIKERRSMRPEARSAARLAAIKESKAKKQETQAAK 123          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_PLUXY (60S ribosomal protein L24 OS=Plutella xylostella GN=RpL24 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.159e-17
Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    4 FLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            F F NSKC+     R  P K+TWT +YR++ KK    E  KK+ R T+K Y R+IVGA+L  I  +R  KPEVR A RE A+++ KE+ K TK  K
Sbjct:   29 FTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRRTQK-YQRAIVGASLSDIMAKRNMKPEVRKAQREQAIKQAKEQKKSTKASK 123          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_DEBHA (60S ribosomal protein L24 OS=Debaryomyces hansenii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.432e-17
Identity = 43/94 (45.74%), Postives = 63/94 (67.02%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 282
            +F F +SK    FH R  P +++WT +YR+QHKK I+ E+ K++ R T K   R+IVGA+LE+I++RR++KP  R AAR+  L + KE  K  K
Sbjct:   28 IFRFQSSKSASLFHQRKNPRRISWTVLYRRQHKKGISEESAKRRTRKTVK-NQRAIVGASLELIKERRSQKPSDRKAARDVKLAKDKEAKKADK 120          
The following BLAST results are available for this feature:
BLAST of CX287060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL24_PRUAV4.556e-4896.9160S ribosomal protein L24 OS=Prunus avium GN=RPL24... [more]
RL24_CICAR1.122e-4693.8160S ribosomal protein L24 OS=Cicer arietinum GN=RP... [more]
RL24_HORVU1.620e-4591.7560S ribosomal protein L24 OS=Hordeum vulgare GN=RP... [more]
RL242_ARATH3.610e-4590.7260S ribosomal protein L24-2 OS=Arabidopsis thalian... [more]
RL241_ARATH4.715e-4590.7260S ribosomal protein L24-1 OS=Arabidopsis thalian... [more]
RL24B_SCHPO4.913e-1846.3960S ribosomal protein L24-B OS=Schizosaccharomyces... [more]
RL24A_SCHPO4.913e-1846.3960S ribosomal protein L24-A OS=Schizosaccharomyces... [more]
RL24_NEUCR6.417e-1846.3960S ribosomal protein L24 OS=Neurospora crassa GN=... [more]
RL24_PLUXY4.159e-1747.9260S ribosomal protein L24 OS=Plutella xylostella G... [more]
RL24_DEBHA5.432e-1745.7460S ribosomal protein L24 OS=Debaryomyces hansenii... [more]

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Properties
Property NameValue
Genbank descriptionC01004C01SK Veg1 Citrus clementina cDNA clone C01004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287060 ID=CX287060; Name=CX287060; organism=Citrus clementina; type=EST; length=291bp
GTTTTCCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGATT
GAAGCCATCGAAGCTTACATGGACAGCCATGTACAGGAAACAGCACAAGA
AGGACATTGCTGCTGAGGCAGTTAAGAAGAAGCGTCGTGCCACTAAGAAG
CCCTATTCAAGATCTATAGTTGGTGCCACCTTGGAAGTTATCCAGAAGAG
AAGAACTGAGAAGCCAGAAGTCCGAGATGCTGCACGGGAGGCTGCACTTC
GTGAAATTAAGGAGAGGATCAAGAAGACTAAGGATGAAAAG
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