CX287061

Overview
NameCX287061
Unique NameCX287061
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length165
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14169 contig Ccv1_Contig14169:227..391. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.178e-26
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 2
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGA
Sbjct:   54 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGA 107          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.178e-26
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 2
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGA
Sbjct:   54 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGA 107          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.844e-26
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 2
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            K+LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA
Sbjct:   55 KFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 108          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 3.715e-26
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 2
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGA
Sbjct:   55 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.276e-26
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 2
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGA
Sbjct:   56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGA 109          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.276e-26
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 2
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGA
Sbjct:   28 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGA 81          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.276e-26
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 2
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGA
Sbjct:   56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGA 109          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.276e-26
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 2
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGA
Sbjct:   56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGA 109          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.081e-25
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 2
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGA
Sbjct:   56 KYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGA 109          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.107e-25
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 2
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA
Sbjct:   19 KYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 72          
The following BLAST results are available for this feature:
BLAST of CX287061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CB23_ORYSJ2.178e-2698.15Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.178e-2698.15Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_LEMGI2.844e-2698.15Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SILPR3.715e-2698.15Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB26_PETSP8.276e-2696.30Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC8.276e-2696.30Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC8.276e-2696.30Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC8.276e-2696.30Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB215_PEA1.081e-2596.30Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_PEA4.107e-2594.44Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank descriptionC01004C02SK Veg1 Citrus clementina cDNA clone C01004C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287061 ID=CX287061; Name=CX287061; organism=Citrus clementina; type=EST; length=165bp
AAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGACTGGTG
AGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAGACCCC
GAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATGGGC
AATGCTTGGAGCTCT
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