CX287075

Overview
NameCX287075
Unique NameCX287075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB2_ANASP (Chaperone protein clpB 2 OS=Anabaena sp. (strain PCC 7120) GN=clpB2 PE=3 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 8.400e-61
Identity = 123/201 (61.19%), Postives = 154/201 (76.62%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGS------QLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEAAA+LKMEITSKP  LDEI+R +L+LEME+LSL  ++D AS++RL RLE EL+ LKE Q  L  QW+ EK V+ ++QS+KEEID+VNLEIQQAER YDLNRAAELKYG+      +LE+ E+EL++   +GKS+LREEVT +DIAEI+SKWTGIP+SKL +S               V+GQD AV +VA+AIQRSRAG
Sbjct:  396 VDEAAARLKMEITSKPEELDEIDRKILQLEMEKLSLQKESDAASRERLERLEKELADLKEEQRTLNTQWQSEKDVINKLQSVKEEIDKVNLEIQQAERNYDLNRAAELKYGNLTDLHRRLEATERELSQTQGTGKSLLREEVTEADIAEIISKWTGIPISKLVESEKEKLLHLEDELHHRVIGQDEAVTAVADAIQRSRAG 596          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.871e-60
Identity = 122/201 (60.70%), Postives = 155/201 (77.11%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYG------SQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DEAAAKLKMEITSKP ALDE++R +L+LEMERLSL  ++D AS+DRL RLE EL+ LKE Q  L  QW+ EK ++ ++Q++KEEID+VN++IQQAER+YDLNRAAELKYG       +L++A+K+L+E  +SG+S+LREEVT  DIAEI+SKWTGIPVSKL  S               VVGQ+ AV+ V+EAIQRSRAG
Sbjct:  397 MDEAAAKLKMEITSKPEALDEVDRKILQLEMERLSLAKESDAASRDRLERLEKELADLKEEQRSLNAQWQAEKDIIDQVQAVKEEIDQVNVQIQQAERDYDLNRAAELKYGKLSELQKRLDAADKQLSETQTSGRSLLREEVTEEDIAEIISKWTGIPVSKLVASEREKLLHLEDELHKRVVGQEEAVRIVSEAIQRSRAG 597          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB1_THEEB (Chaperone protein clpB 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.169e-60
Identity = 126/201 (62.69%), Postives = 150/201 (74.63%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYG------SQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEAAAKLKMEITSKP  LDEI+R +L+LEMERLSL  +T  AS+DRL +LE EL+ LKE Q++L  QW+ EK V+ R+QSIKEEI++VN+EIQQAER YDLNRAAELKYG       +L  AE +L E    G+S+LR+EVT +DIAEI+SKWTGIPVSKL +S               VVGQD AV +VAEAIQRSRAG
Sbjct:  395 VDEAAAKLKMEITSKPEELDEIDRKILQLEMERLSLQKETSAASRDRLEKLERELADLKEEQSRLNAQWQAEKEVIDRLQSIKEEIEKVNIEIQQAERNYDLNRAAELKYGKLTELHKKLAEAEAKLREIQVGGRSLLRDEVTEADIAEIISKWTGIPVSKLVESEAQKLLHLEEELHKRVVGQDEAVSAVAEAIQRSRAG 595          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_PLEBO (Chaperone protein clpB OS=Plectonema boryanum GN=clpB PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 4.609e-59
Identity = 122/201 (60.70%), Postives = 149/201 (74.13%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGS------QLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEAAAKLKMEITSKP  LDE++R VL+LEMERLSL  + D  S+DRL RLE EL+  KE Q++L  QW+ EK+V+T +Q +KEEIDRVNLEIQQAER+YDLNRAAELKYG       ++E  E +L++   SG ++LREEV  SDIAEI+SKWTGIPVSKL +S               V+GQD AV +V++AIQRSRAG
Sbjct:  397 VDEAAAKLKMEITSKPEELDEVDRKVLQLEMERLSLQKENDAGSRDRLERLERELADFKEDQSKLNAQWQAEKSVITDLQKLKEEIDRVNLEIQQAERDYDLNRAAELKYGKLNELNRKVEETESQLSQIQKSGATLLREEVLESDIAEIISKWTGIPVSKLVESEMQKLLQLDDVLHQRVIGQDEAVTAVSDAIQRSRAG 597          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNY3 (Chaperone protein clpB 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.341e-58
Identity = 120/201 (59.70%), Postives = 151/201 (75.12%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGS------QLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEAAAKLKMEITSKP  LDE++R +L+LEMERLSL  + D ASK+RL +LE EL+  KE Q++L  QW+ EKTV+ +I+++KE ID+VNLEIQQA+R+YD N+AAEL+YG       Q+E+ E +L E  +SGKS+LREEV  SDIAEI+SKWTGIP+SKL +S               V+GQD AV +VAEAIQRSRAG
Sbjct:  396 VDEAAAKLKMEITSKPEELDEVDRKILQLEMERLSLQRENDSASKERLEKLEKELADFKEEQSKLNGQWQSEKTVIDQIRTVKETIDQVNLEIQQAQRDYDYNKAAELQYGKLTDLQRQVEALETQLAEQQTSGKSLLREEVLESDIAEIISKWTGIPISKLVESEKEKLLHLEDELHSRVIGQDEAVTAVAEAIQRSRAG 596          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 1.483e-57
Identity = 123/202 (60.89%), Postives = 152/202 (75.25%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELNEY-------ISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDE+AA+LKMEITSKP  LDEI+R +L+LEMERLSL  ++D AS++RL RLE EL+ LKE Q  L+ QW+ EK V+T IQS+KEEID+VNL IQQAER+YDLN+AAELKYG +L   +++LNE         +SGKS+LREEVT  DIAEI+SKWTGIPVSKL +S               V+GQ+ AV +VA+AIQRSRAG
Sbjct:  396 VDESAARLKMEITSKPEELDEIDRKILQLEMERLSLQKESDLASQERLQRLEKELADLKEEQRSLSSQWQAEKDVITDIQSVKEEIDQVNLLIQQAERDYDLNKAAELKYG-KLTELQRKLNEMEGGLATTHTSGKSLLREEVTEVDIAEIISKWTGIPVSKLVESEMQKLLNLDEELHQRVIGQEEAVSAVADAIQRSRAG 596          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNPX (Chaperone protein clpB 1 OS=Synechococcus sp. (strain WH8102) GN=clpB1 PE=3 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 7.880e-51
Identity = 103/201 (51.24%), Postives = 146/201 (72.64%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGS------QLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDE+AA+LKMEITSKP  +DEI+R +L+LEME+LSL  ++D AS++RL R+E EL+ L E+Q+ L  QW+ EK  + ++ ++KEEI+RV L+++QA+R YDLN+AAEL+YG+      QL+  E  L +   + K++LREEVT  DIAE+++KWTGIPV++L QS               V+GQ+ AV +VA+AIQRSRAG
Sbjct:  395 VDESAARLKMEITSKPEQIDEIDRKILQLEMEKLSLGRESDSASQERLQRIERELAELGEQQSSLNAQWQSEKGAIDQLSALKEEIERVQLQVEQAKRNYDLNKAAELEYGTLATLQRQLQEQEDLLEDEDGTDKTLLREEVTEDDIAEVIAKWTGIPVARLVQSEMEKLLQLEDDLHQRVIGQNQAVTAVADAIQRSRAG 595          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.712e-50
Identity = 103/203 (50.74%), Postives = 147/203 (72.41%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSQLESAEKELNEYISS--------GKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            +DE+AA+LKMEITSKP  +DEI+R +++LEME+LSL  ++D  SK+RL +LE EL+ L E+Q+ L  QW+ EK  +  + S+KEEI+RV L+++QA+R YDLN+AAEL+YG+ L   +K+L+E  ++         KS+LREEVT  DIA++++KWTGIPV+KL QS               V+GQ+ AV++VA+AIQRSRAG
Sbjct:  395 MDESAARLKMEITSKPEEIDEIDRKIVQLEMEKLSLGRESDSVSKERLEKLERELAELAEQQSALNAQWQQEKGAIDDLSSLKEEIERVQLQVEQAKRSYDLNKAAELEYGT-LAGLQKQLSEKETALAQDGEAGDKSLLREEVTEDDIADVIAKWTGIPVAKLVQSEMEKLLGLEAELHQRVIGQEQAVQAVADAIQRSRAG 596          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB2_THEEB (Chaperone protein clpB 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.900e-45
Identity = 100/209 (47.85%), Postives = 141/209 (67.46%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTD--------KASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYG------SQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEAAAKLKMEIT+KP  L+ + R + +LEMERLSL  +          +A++DRL R+EAE++ L+ RQ  +  +W+ EK ++ RI S+KEE D+V L+I+QAER+Y+LN+AA+LKYG       +LE+ E +L E  ++G + LR++VT +DIAEIV+KWTGIP+ KL  S               V+GQ  AV +VA AI+R+RAG
Sbjct:  396 VDEAAAKLKMEITTKPAELEALERRLRQLEMERLSLKQEESLPLSQAPLQATRDRLQRIEAEIAQLQPRQQAMQARWQAEKELLERINSLKEEEDQVKLQIEQAERDYNLNKAAQLKYGRLETLQRELEATEAQLLELQAAGGTFLRDQVTEADIAEIVAKWTGIPLQKLMASERQKLLQLEQVLHQRVIGQSDAVAAVAAAIRRARAG 604          
BLAST of CX287075 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.188e-44
Identity = 98/203 (48.28%), Postives = 138/203 (67.98%), Query Frame = 1
Query:    7 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKAS--KDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGS------QLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRSRAG 591
            VDEAAA+LKMEITSKP  L+ I+R +++LEME+LSL  +   A+  K+RL R+E E++ L E+Q  L  QW+ EK V+  I  +K+E D + ++I+QAER YDLN+AA+LKYG         E+ E +L E  S G ++LRE+VT +DIAEIV+KWTGIPV++L +S               V+GQ  AV++V+ AI+R+RAG
Sbjct:  397 VDEAAAQLKMEITSKPADLEAIDRRLMQLEMEKLSLAGEEKVAAPTKERLQRIELEITNLTEKQQDLNNQWQGEKQVLEAISLLKKEEDALRVQIEQAERAYDLNKAAQLKYGKLEGVQRDREAKEAKLLELQSQGSTLLREQVTEADIAEIVAKWTGIPVNRLLESERQKLLQLESHLHQRVIGQQEAVEAVSAAIRRARAG 599          
The following BLAST results are available for this feature:
BLAST of CX287075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CLPB2_ANASP8.400e-6161.19Chaperone protein clpB 2 OS=Anabaena sp. (strain P... [more]
CLPB_GLOVI1.871e-6060.70Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB1_THEEB4.169e-6062.69Chaperone protein clpB 1 OS=Thermosynechococcus el... [more]
CLPB_PLEBO4.609e-5960.70Chaperone protein clpB OS=Plectonema boryanum GN=c... [more]
CLPB2_SYNY31.341e-5859.70Chaperone protein clpB 2 OS=Synechocystis sp. (str... [more]
CLPB1_SYNE71.483e-5760.89Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]
CLPB1_SYNPX7.880e-5151.24Chaperone protein clpB 1 OS=Synechococcus sp. (str... [more]
CLPB_PROMM8.712e-5050.74Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB2_THEEB2.900e-4547.85Chaperone protein clpB 2 OS=Thermosynechococcus el... [more]
CLPB1_ANASP4.188e-4448.28Chaperone protein clpB 1 OS=Anabaena sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionC01004D07SK Veg1 Citrus clementina cDNA clone C01004D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287075 ID=CX287075; Name=CX287075; organism=Citrus clementina; type=EST; length=592bp
CACGAGGTGGATGAAGCAGCTGCCAAACTGAAAATGGAAATTACTTCAAA
ACCTACTGCCCTTGATGAGATCAATCGTTCGGTATTGAAACTAGAGATGG
AGAGGCTATCTCTGACAAATGATACAGACAAAGCTTCAAAAGATAGGTTG
AACCGCCTTGAGGCTGAACTGTCACTTCTGAAGGAGAGACAAGCTCAGCT
GACTGAGCAGTGGGAGCACGAAAAGACTGTCATGACGCGCATTCAGTCCA
TTAAAGAAGAGATTGACAGAGTAAATCTTGAGATCCAGCAGGCTGAGCGT
GAGTATGATCTTAATCGTGCTGCTGAGCTGAAGTATGGGAGCCAACTTGA
AAGTGCCGAAAAAGAGTTAAATGAGTACATAAGCTCCGGCAAGTCCATGT
TGAGAGAAGAAGTTACGGGAAGTGACATTGCTGAAATTGTAAGTAAATGG
ACTGGTATTCCTGTTTCCAAGCTTCAACAATCAGAGAGGGAGAAGCTGTT
ACATTTGGAGGAAGAGCTGCACAAACGTGTTGTGGGTCAAGATCCAGCAG
TGAAATCAGTAGCTGAGGCGATTCAGCGATCTCGAGCAGGTC
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