CX287078

Overview
NameCX287078
Unique NameCX287078
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9947 contig Ccv1_Contig9947:26..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287078 vs. ExPASy Swiss-Prot
Match: TM208_DANRE (Transmembrane protein 208 OS=Danio rerio GN=tmem208 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.373e-21
Identity = 48/128 (37.50%), Postives = 79/128 (61.72%), Query Frame = 2
Query:  155 KREMANQGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMS-TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPA 535
            K ++  +G K+  EEN   ++   R+I+  N IY  V +++F+++ ++  W  L+     Y   Y+ +SAMAKP + +DG L+DGG D++   G+  +L DVI +T+ VQV+S LS  FWY +L+ PA
Sbjct:    4 KGKVGTKGKKQIHEENQDTLKFYSRIILGANAIYIAVNLLLFYNSSSFWTWFSLMFAVAVYVGSYRSMSAMAKPAFAEDGSLLDGGIDLNMEQGMAEHLKDVILLTAIVQVLSTLSSYFWYLWLLAPA 131          
BLAST of CX287078 vs. ExPASy Swiss-Prot
Match: TM208_DICDI (Transmembrane protein 208 homolog OS=Dictyostelium discoideum GN=tmem208 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.702e-20
Identity = 50/130 (38.46%), Postives = 80/130 (61.54%), Query Frame = 2
Query:  164 MANQGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIIFHS-TFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAYQ 550
            MAN GAKKRK +N + + K+R LI+A   I +++  +++HS TF    W   +  +      Y  +++M K TY ++GELIDGG D++ GG+  Y  D+IY+   +Q + ++S+K  Y  LVIPAF  ++
Sbjct:    1 MANSGAKKRKTQNEKELFKVR-LIMAAGTIPYILYRVVYHSETFGGWLWFAYLSLNALNMFAYYIITSMCKLTYDNNGELIDGGSDLNQGGMTEYYFDIIYVCCIIQGLGLISDKCLYLILVIPAFAIFK 129          
BLAST of CX287078 vs. ExPASy Swiss-Prot
Match: TM208_BOVIN (Transmembrane protein 208 OS=Bos taurus GN=TMEM208 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.317e-17
Identity = 43/132 (32.58%), Postives = 78/132 (59.09%), Query Frame = 2
Query:  155 KREMANQGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMS-TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAY 547
            K ++  +G K+  EEN   ++   R+I+  N IY +V +++F+S+ ++  W+ L+ +   Y   Y  +S+MA+  +++DG L+DGG D++   G+  +L DVI +T+ VQV+S  S   W  +L+ P    Y
Sbjct:    4 KGKVGTRGKKQIFEENKETLKFYLRIILGANAIYCLVTLVVFYSSASFWAWMALLFSLAVYGASYHSMSSMARAAFSEDGALVDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYIWSFWLLAPGRALY 135          
BLAST of CX287078 vs. ExPASy Swiss-Prot
Match: TM208_MOUSE (Transmembrane protein 208 OS=Mus musculus GN=Tmem208 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 43/132 (32.58%), Postives = 77/132 (58.33%), Query Frame = 2
Query:  155 KREMANQGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMS-TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAY 547
            K ++  +G K+  EEN   ++   R+I+  N IY +V ++ F+S+ ++  W+ L  +   Y   Y  +S+MA+ ++++DG L+DGG D++   G+  +L DVI +T+ VQV+S  S   W  +L+ P    Y
Sbjct:    4 KGKVGTRGKKQIFEENKETLKFYLRIILGANAIYCLVTLVFFYSSASFWAWMALGFSLAVYGASYHSMSSMARASFSEDGSLMDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYIWSFWLLAPGRALY 135          
BLAST of CX287078 vs. ExPASy Swiss-Prot
Match: TM208_XENLA (Transmembrane protein 208 OS=Xenopus laevis GN=tmem208 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 40/132 (30.30%), Postives = 77/132 (58.33%), Query Frame = 2
Query:  155 KREMANQGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMS-TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAY 547
            K ++  +G K+  EEN   +    R+I+   V+   + + +F+S+  +  W  LV + + YA  Y+ + +MA+ ++++DG L+DGG D++   G+  ++ D++ +T+ VQV+S  S  FWY +L+ P    Y
Sbjct:    4 KGKVGTKGKKQIYEENKETLSFYLRIILGATVLCGAINLGVFYSSSNFWTWATLVFSGIVYAGAYRSMRSMAQASFSEDGSLLDGGIDLNMEQGMAEHIKDIVLLTAIVQVLSCFSLYFWYFWLLAPGRALY 135          
BLAST of CX287078 vs. ExPASy Swiss-Prot
Match: TM208_HUMAN (Transmembrane protein 208 OS=Homo sapiens GN=TMEM208 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 43/132 (32.58%), Postives = 76/132 (57.58%), Query Frame = 2
Query:  155 KREMANQGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMS-TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAY 547
            K ++  +G K+  EEN   ++   R+I+  N IY +V ++ F+S+ ++  W+ L  +   Y   Y  +S+MA+  +++DG L+DGG D++   G+  +L DVI +T+ VQV+S  S   W  +L+ P    Y
Sbjct:    4 KGKVGTRGKKQIFEENRETLKFYLRIILGANAIYCLVTLVFFYSSASFWAWLALGFSLAVYGASYHSMSSMARAAFSEDGALMDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYVWSFWLLAPGRALY 135          
BLAST of CX287078 vs. ExPASy Swiss-Prot
Match: TM208_CHICK (Transmembrane protein 208 OS=Gallus gallus GN=TMEM208 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 43/141 (30.50%), Postives = 71/141 (50.35%), Query Frame = 2
Query:  155 KREMANQGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMST----GGICGYLH------DVIYITSFVQVMSILSEKFWYTYLVIPAFGAY 547
            K +   +G K+  EEN   +    R+I+  + +Y  V +++F+   +   W+    +S  Y   Y+ +S+MA+P + DDG L DGG D++        C + H      DVI +T+ VQV+S  S   WY +L+ P    Y
Sbjct:    4 KGKAGTKGKKQIFEENRETLRFYLRIILGASAVYAAVNLVVFYPAASAWTWLAFAFSSAVYGASYRSMSSMARPAFADDGSLADGGIDLNMEQGWQSECPHPHEPRHLKDVILLTAMVQVLSCFSLYVWYFWLLAPGRALY 144          
The following BLAST results are available for this feature:
BLAST of CX287078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM208_DANRE4.373e-2137.50Transmembrane protein 208 OS=Danio rerio GN=tmem20... [more]
TM208_DICDI3.702e-2038.46Transmembrane protein 208 homolog OS=Dictyostelium... [more]
TM208_BOVIN1.317e-1732.58Transmembrane protein 208 OS=Bos taurus GN=TMEM208... [more]
TM208_MOUSE8.534e-1732.58Transmembrane protein 208 OS=Mus musculus GN=Tmem2... [more]
TM208_XENLA1.901e-1630.30Transmembrane protein 208 OS=Xenopus laevis GN=tme... [more]
TM208_HUMAN1.901e-1632.58Transmembrane protein 208 OS=Homo sapiens GN=TMEM2... [more]
TM208_CHICK2.745e-1530.50Transmembrane protein 208 OS=Gallus gallus GN=TMEM... [more]
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Properties
Property NameValue
Genbank descriptionC01004D11SK Veg1 Citrus clementina cDNA clone C01004D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287078 ID=CX287078; Name=CX287078; organism=Citrus clementina; type=EST; length=636bp
GTTGAAACCTACTCCACAACTCAAATCCCCAAACCGAATACCCGACGCCG
CCGCACTTGAAGATCGCCGTTGCTCCATCAATCGAAGATTCAGACGCCGC
AGAGCGGCCTCACCTCTCTCTCATCACGTGATTCACGCTAGACCGGAAAG
ATAGAAAAGAGAGATGGCTAATCAAGGAGCCAAGAAGCGCAAGGAAGAGA
ACGCACGGCATATGGAAAAGCTACGCCGTCTCATTATTGCCTGCAATGTT
ATATATTTCGTGGTGAGGATGATTATCTTTCATTCCACATTCACATGGAA
GCACTGGGTGGGTCTAGTTTTGACATCTGTGGCATATGCGATTCCATATC
AACAGCTTTCTGCGATGGCAAAACCTACATATACTGATGATGGGGAACTT
ATTGATGGTGGATTTGATATGAGCACTGGTGGAATTTGTGGCTATTTACA
TGATGTTATCTACATCACAAGCTTTGTGCAAGTCATGTCCATTCTCTCTG
AAAAATTTTGGTACACATATCTGGTGATACCAGCATTTGGAGCGTACCAA
TCCTTTGGTTTCATTAAAGGATTTTTGCCGCAAGGTTCAGAGGGAGACAC
GGAGGATGAAAAGACTCGCAAAAAGAGGGAAAAGAT
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