CX287083

Overview
NameCX287083
Unique NameCX287083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length181
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:576..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287083 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.882e-31
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 2
Query:    2 DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 181
            DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGC
Sbjct:   53 DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGC 112          
BLAST of CX287083 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.095e-30
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 2
Query:    2 DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 181
            DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC
Sbjct:   55 DRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 114          
BLAST of CX287083 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.095e-30
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 2
Query:    2 DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 181
            DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC
Sbjct:   53 DRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 112          
BLAST of CX287083 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.095e-30
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 2
Query:    2 DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 181
            DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC
Sbjct:   55 DRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 114          
BLAST of CX287083 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.095e-30
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 2
Query:    2 DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 181
            DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC
Sbjct:   55 DRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 114          
BLAST of CX287083 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.095e-30
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 2
Query:    2 DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 181
            DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC
Sbjct:   55 DRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 114          
BLAST of CX287083 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.095e-30
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 2
Query:    2 DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 181
            DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC
Sbjct:   54 DRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 113          
BLAST of CX287083 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.095e-30
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 2
Query:    2 DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 181
            DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC
Sbjct:   55 DRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 114          
BLAST of CX287083 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.095e-30
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 2
Query:    2 DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 181
            DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC
Sbjct:   54 DRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 113          
BLAST of CX287083 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.095e-30
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 2
Query:    2 DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 181
            DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC
Sbjct:   53 DRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 112          
The following BLAST results are available for this feature:
BLAST of CX287083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB21_SINAL2.882e-3198.33Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2G_SOLLC1.095e-3098.33Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC1.095e-3098.33Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SPIOL1.095e-3098.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB27_TOBAC1.095e-3098.33Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC1.095e-3098.33Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_NICPL1.095e-3098.33Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_TOBAC1.095e-3098.33Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP1.095e-3098.33Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_TOBAC1.095e-3098.33Chlorophyll a-b binding protein 21, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01004E04SK Veg1 Citrus clementina cDNA clone C01004E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287083 ID=CX287083; Name=CX287083; organism=Citrus clementina; type=EST; length=181bp
GGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACT
TGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCA
GCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTG
CAGATGGGCCATGTTGGGAGCTCTTGGATGC
back to top