CX287101
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNS9 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9902) GN=rlmN PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19 Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 1 Query: 139 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 NVLLG S EL+ AV G +S+RG+Q+H +Y + VK + LP+ +R +L+ + VGRL + AAD T KLL+ +D IETVGIP + RLT C+SSQV Sbjct: 3 NVLLGRSAAELEDWAVAQGHKSFRGRQIHDWLYNKGVKSLSEISALPKQWRTELEAQTFRVGRLKLVHQSVAADATTKLLLATDDGETIETVGIPTD-----QRLTVCISSQV 110
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNS3 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9311) GN=rlmN PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.089e-18 Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 1 Query: 139 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 + LLG S+ EL++ AV GQ ++RG+QLH +Y + V++++ LP+++R LQ G +VGRL +AD T KLL+ ED +ETVGIP + RLT CVSSQV Sbjct: 3 SALLGRSKSELEEWAVAQGQPAFRGRQLHDWLYAKGVRDLQGITVLPKAWRASLQNEGVSVGRLHEQERRVSADATTKLLLGTEDGETLETVGIPTD-----QRLTVCVSSQV 110
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROMT (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain NATL2A) GN=rlmN PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.422e-18 Identity = 48/122 (39.34%), Postives = 77/122 (63.11%), Query Frame = 1 Query: 115 SRAPRVDANV-LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 ++ P++ +N LLG+S ++L++ A G++S+RG+Q+H IY+R K +++ LP+ +R+ L G +GRL V A D T+KLL+ D ++ETVGIP + RLT CVSSQ+ Sbjct: 2 TKLPKLSSNSSLLGLSSEDLEEFARQEGEKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMGTFDGEIVETVGIPTD-----KRLTVCVSSQI 118
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROM1 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain NATL1A) GN=rlmN PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.422e-18 Identity = 48/122 (39.34%), Postives = 77/122 (63.11%), Query Frame = 1 Query: 115 SRAPRVDANV-LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 ++ P++ +N LLG+S ++L++ A G++S+RG+Q+H IY+R K +++ LP+ +R+ L G +GRL V A D T+KLL+ D ++ETVGIP + RLT CVSSQ+ Sbjct: 2 TKLPKLSSNSSLLGLSSEDLEEFARQEGEKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMGTFDGEIVETVGIPTD-----KRLTVCVSSQI 118
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROM4 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9211) GN=rlmN PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18 Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 1 Query: 142 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 VLLG + +L+KLA + G+ ++RG+Q+H +Y++ V+++E LP+ +R L + G GRL + + A DGT+KLL++ D IE VGIP RLT CVSSQV Sbjct: 12 VLLGQNVAKLEKLAQEYGEPAFRGRQIHEWLYQKGVRKLEEISVLPKLWRTTLSDQGVCTGRLEEVKRLVANDGTIKLLLETSDRESIEAVGIPTNS-----RLTTCVSSQV 118
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNPX (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain WH8102) GN=rlmN PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.169e-18 Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = 1 Query: 142 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 +LLG S EL+ AV GQ+ +RG+QLH +Y + + + LP+++R L+E G VGRL AAD T KLL+ +D IETVGIP + RLT CVSSQV Sbjct: 1 MLLGRSAAELESWAVAQGQKPFRGRQLHDWLYAKGARSLSEITVLPKAWRESLKEDGVEVGRLKEVHRSVAADATTKLLLSTDDGETIETVGIPTD-----QRLTVCVSSQV 107
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNSC (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9605) GN=rlmN PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 9.220e-18 Identity = 52/111 (46.85%), Postives = 64/111 (57.66%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG S ELQ AV GQ+ +RG+QLH IY + + + + P+++R L EAG VGRL A D T KLL+ ED IETVGIP + RLT CVSSQV Sbjct: 5 LLGRSAAELQDWAVAQGQKPFRGRQLHDWIYAKGARSLADITVFPKTWRAALVEAGVDVGRLKEVHHSVATDATTKLLLSTEDGETIETVGIPTD-----QRLTVCVSSQV 110
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROMA (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus GN=rlmN PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.204e-17 Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG+ +L++LA+D G+ YRG+QLH +Y++ V +++ LP+++RN L + G +VG L A D T+KLL+ D +IETVGIP + RLT CVSSQ+ Sbjct: 8 LLGLDLSQLERLALDHGESLYRGRQLHQWLYQKGVDNLDDITVLPKAWRNSLIQKGISVGGLVEVNRFIAGDRTIKLLLSTGDGEIIETVGIPSGN-----RLTICVSSQI 113
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJA (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain JA-3-3Ab) GN=rlmN PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.054e-17 Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG S L+ AV+ GQ +YRG+QLH +Y + ++ ++ P+++R LQE + VGR + + + + DGTVK L++L D LIETVGIP RLT CVSSQV Sbjct: 8 LLGQSLAALKDWAVEQGQPAYRGQQLHTWLYHKGIRSLQEVTVFPKAWREALQE--YPVGRSQVVQRIESRDGTVKFLLQLADGELIETVGIPT-----ARRLTVCVSSQV 111
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROM2 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9215) GN=rlmN PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.054e-17 Identity = 49/113 (43.36%), Postives = 70/113 (61.95%), Query Frame = 1 Query: 145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477 LLG S ++L+ +A++ GQ ++RG+Q+H+ IY + K K I+ LP FR L++ G+ + L + A DGT+KLL+ DN IE VGIP E RLTAC+SSQV Sbjct: 4 LLGSSVKDLENVALEYGQAAFRGRQIHNWIYNYRNKKKSIDQIEALPLDFRKKLKDDGFKLSELSVQERNLANDGTLKLLLSANDNESIECVGIPTE-----KRLTACLSSQV 111 The following BLAST results are available for this feature:
BLAST of CX287101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 44
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287101 ID=CX287101; Name=CX287101; organism=Citrus clementina; type=EST; length=477bpback to top |