CX287113

Overview
NameCX287113
Unique NameCX287113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length496
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13848 contig Ccv1_Contig13848:544..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.247e-84
Identity = 154/164 (93.90%), Postives = 160/164 (97.56%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            RKPA  FLDELG++YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK+VVSSCGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTRE+VPGMIVTGMEVA IDGAPRMGPT
Sbjct:  143 RKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPT 306          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.247e-84
Identity = 155/164 (94.51%), Postives = 159/164 (96.95%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            RKPA  FLDELG+EYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK+VVSSCGHDGPFGATGVK L+SIGMID+VPGMKALDMN AEDAIVRLTREIVPGMIVTGMEVA IDGAPRMGPT
Sbjct:  139 RKPAHLFLDELGIEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPT 302          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 5.792e-82
Identity = 151/164 (92.07%), Postives = 155/164 (94.51%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            RKPA  FLDE+GV YDEQD YVV+KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMID VPGMKALDMNTAEDAIVRLTRE+VPGMIVTGMEVA IDGAPRMGPT
Sbjct:  136 RKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPT 299          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 7.081e-80
Identity = 146/164 (89.02%), Postives = 154/164 (93.90%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            RKPA  FLDELGV YDE ++YVVIKHAALFTST+MS LLARPNVKLFNAVA EDLIV+GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK+VVSSCGHDGPFGATGVKRL+ IGMI +VPGMKALDMNTAED IVRLTRE+VPGMIVTGMEVA IDGAPRMGPT
Sbjct:  142 RKPAHLFLDELGVAYDEAEDYVVIKHAALFTSTVMSLLLARPNVKLFNAVAVEDLIVRGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPT 305          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 2.975e-78
Identity = 142/164 (86.59%), Postives = 153/164 (93.29%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            R+PA  FLDELGV YDE ++YVV+KHAALFTST+MS+LLARPNVKLFNAVA EDLIV+ GRVGGVVTNWALVSMNHDTQSCMDPNVMEAK+VVSSCGHDGPFGATGVKRL+ IGMI +VPGMKALDMN AED IVRLTRE+VPGMIVTGMEVA IDGAPRMGPT
Sbjct:  139 RRPAHLFLDELGVGYDEAEDYVVVKHAALFTSTVMSRLLARPNVKLFNAVAVEDLIVRRGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPT 302          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 5.459e-56
Identity = 107/168 (63.69%), Postives = 131/168 (77.98%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            RKPA  FL E+GV Y+++ NYVV+KHAALFTSTIMSK+L  PN+KLFNA   EDLI +    G R+ GVVTNW LVSM+HD QSCMDPN + A +++S+ GHDGP GA  VKRL S+  I+ + GM+ LDMN AEDAIV+ TREIVPG+IV GME++ +DGA RMGPT
Sbjct:  125 RKPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVLQMPNIKLFNATCVEDLITRPSEEGVRIAGVVTNWTLVSMHHDDQSCMDPNTINAPLIISTTGHDGPMGAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPT 292          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 7.130e-56
Identity = 108/168 (64.29%), Postives = 130/168 (77.38%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            RKPA  FL E+GV Y+++ NYVV+KHAALFTSTIMSK+L  PN KLFNA   EDLI +    G R+ GVVTNW LVSM+HD QSCMDPN + A +V+S+ GHD P GA  VKRL S+G I+ + GM+ LDMN AEDAIV+ TREIVPG+IV GME++ +DGA RMGPT
Sbjct:  129 RKPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVLQLPNCKLFNATCVEDLITRPSKEGVRISGVVTNWTLVSMHHDDQSCMDPNTINAPLVISTTGHDAPMGAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPT 296          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.030e-54
Identity = 106/169 (62.72%), Postives = 130/169 (76.92%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            RKPA  FL+E+GV Y+++ +YVV+KHAALFTST+M++ LA PNVKLFNA A EDLIVK G     R+ GVVTNW LVS+NH  QSCMDPN + A +VVS+ GHDGPFGA  VKRL S  ++ ++  M+ LDMN AED IV+ TRE+ PGMIV GME++  DGA RMGPT
Sbjct:  130 RKPADLFLNEIGVPYEDEGDYVVVKHAALFTSTVMARTLALPNVKLFNATAVEDLIVKEGKDGKQRIAGVVTNWTLVSLNHGLQSCMDPNTINAHLVVSATGHDGPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPT 298          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 1.065e-51
Identity = 99/171 (57.89%), Postives = 130/171 (76.02%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQ--DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            R+PA+ FL+ELGV Y+E    NYVV+KHA+LFTST+MSK+L+ PNVKLFNA A EDLI +       ++ GVV NW LV+++HD  SCMDPN + A +++S+ GHDGPFGA   KRL S+G +D + GM+ LDMN+AEDAIV+ TRE+  G+I+ GME++ IDG  RMGPT
Sbjct:  129 RRPAEVFLNELGVPYEEDANPNYVVVKHASLFTSTLMSKVLSFPNVKLFNATAVEDLITRPTENGNPQIAGVVVNWTLVTLHHDDHSCMDPNTINAPVIISTTGHDGPFGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPT 299          
BLAST of CX287113 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.392e-51
Identity = 99/171 (57.89%), Postives = 126/171 (73.68%), Query Frame = 1
Query:    4 RKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-------GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVA*IDGAPRMGPT 495
            RKPA  FLD++GV Y+++ N+VV+KHAALFTST++SK+LA PNVK+FNA A EDLI+K         R+ G VTNW LVS+NHD QSCMDP+ + A +V S  GHDGPFGA  VKR+ S G+ + +  M+ LDM  AED I   TREI+PG+IV GME++  DG+ RMGPT
Sbjct:  134 RKPADEFLDQVGVPYEDEGNFVVVKHAALFTSTVLSKVLAMPNVKMFNATACEDLIIKPCPINPGVQRIAGCVTNWTLVSLNHDHQSCMDPSTITAPLVCSFAGHDGPFGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPT 304          
The following BLAST results are available for this feature:
BLAST of CX287113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
THI4_CITSI1.247e-8493.90Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL1.247e-8494.51Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH5.792e-8292.07Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE7.081e-8089.02Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE2.975e-7886.59Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSOX5.459e-5663.69Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSSH7.130e-5664.29Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI2_SCHPO1.030e-5462.72Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_ASPOR1.065e-5157.89Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_UROFA1.392e-5157.89Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01004H01SK Veg1 Citrus clementina cDNA clone C01004H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287113 ID=CX287113; Name=CX287113; organism=Citrus clementina; type=EST; length=496bp
AGGCGCAAGCCAGCTCAGAGATTCCTAGACGAGCTCGGCGTCGAGTACGA
CGAGCAAGACAACTACGTCGTGATCAAGCATGCCGCGTTGTTCACTTCAA
CAATCATGAGCAAGCTGTTGGCGAGGCCAAACGTGAAGTTGTTCAACGCT
GTTGCAGCTGAGGATTTGATCGTCAAGGGAGGGAGAGTAGGTGGCGTCGT
CACAAACTGGGCCTTGGTGTCTATGAATCACGACACACAGTCTTGCATGG
ACCCCAATGTGATGGAGGCCAAGATTGTGGTCAGCTCGTGTGGCCATGAC
GGCCCTTTTGGGGCTACCGGTGTTAAGAGGCTTAAGAGTATTGGCATGAT
TGACTCCGTCCCCGGAATGAAAGCTCTCGATATGAACACTGCAGAGGATG
CTATCGTTAGGCTTACCAGGGAGATCGTGCCTGGCATGATTGTCACGGGC
ATGGAAGTCGCATAGATCGACGGTGCCCCTAGAATGGGACCTACAT
back to top