CX287114

Overview
NameCX287114
Unique NameCX287114
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1066..1606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 4.165e-58
Identity = 106/177 (59.89%), Postives = 143/177 (80.79%), Query Frame = 1
Query:   13 DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            +L FP F  ID LF +GV LP +++ GF ++++PRL++ + D+ GD ILLF+TP  + +DKF W RDEEF+R+TLAG+NPY+I L+ E+PLKS LDP +YGP ESAIT +L+E+++  +++VEEAI QK+LF+LD+HDLFLPYV K+R LK TT+YGSRTIFFLT  GTLR +AIEL
Sbjct:  375 NLPFPSFFVIDKLFEDGVELPGVEKLGFLHSIVPRLLELLRDSPGDKILLFDTPANVQKDKFAWLRDEEFARETLAGINPYAIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMTVEEAISQKRLFMLDFHDLFLPYVHKIRSLKHTTMYGSRTIFFLTDDGTLRLLAIEL 551          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.481e-55
Identity = 102/178 (57.30%), Postives = 140/178 (78.65%), Query Frame = 1
Query:   19 GFPYFSAIDALFNEGVNLPPLKQEG----FWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            GF +F AIDAL+++G+ LP     G      N ++PR+V+ IEDT +++L FE PE ++RD+F WFRDEEF+RQTLAGLNP  IR +TE+P+ S LDP +YGP ESA++ E++EK + G ++VEEA+++K+LF+LDYHD+FLPYV +VR+L  TTLYGSRT+FFL+  GTL P+AIEL
Sbjct:  332 GFSHFPAIDALYSDGIPLPVDGHGGNSFNVINDVIPRVVQMIEDTTEHVLRFEVPEMLERDRFSWFRDEEFARQTLAGLNPICIRRLTEFPIVSKLDPAVYGPAESALSKEILEKMMNGRMTVEEAMEKKRLFLLDYHDVFLPYVHRVRELPDTTLYGSRTVFFLSDEGTLMPLAIEL 509          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.310e-55
Identity = 103/177 (58.19%), Postives = 134/177 (75.71%), Query Frame = 1
Query:   10 PDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            P   FP+F AI  LF EG+ LP  K  G    LLPR++KA+ +  D+IL F+ P  ++RD+F W RD+EF+RQTLAGLNPYSI+L+ EWPL S LDP +YG P S IT E++E+E+ G ++V+EA+K K+LF+LDYHDL LPYV KVR+L +TTLY SRT+FFL+   TLRP+AIEL
Sbjct:  334 PQEPFPHFKAIQNLFEEGIQLP--KDAGLL-PLLPRIIKALGEAQDDILQFDAPVLINRDRFSWLRDDEFARQTLAGLNPYSIQLVEEWPLISKLDPAVYGDPTSLITWEIVEREVKGNMTVDEALKNKRLFVLDYHDLLLPYVNKVRELNNTTLYASRTLFFLSDDSTLRPVAIEL 507          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.638e-54
Identity = 101/177 (57.06%), Postives = 137/177 (77.40%), Query Frame = 1
Query:   13 DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            +L FP F  ID LF +GV LP + +  F  +++PRL++ + DT  + IL FETP  + +DKF W RDEEF+R+TLAG+NPY+I L+ E+PLKS LDP +YGP ESAIT +L+E+++  +++VEEAI QK+LF+LD+HDLFLPYV K+R L  TT+YGSRT+FFLT  GTL+ +AIEL
Sbjct:  358 NLPFPSFFVIDKLFEDGVELPGVDKLNFLESVVPRLLEHLRDTPAEKILRFETPANIQKDKFAWLRDEEFARETLAGINPYAIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMTVEEAISQKRLFMLDFHDLFLPYVHKIRSLDHTTMYGSRTVFFLTDDGTLQLLAIEL 534          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.137e-47
Identity = 99/185 (53.51%), Postives = 127/185 (68.65%), Query Frame = 1
Query:   22 FPYFSAIDALFNEGVNLPPLKQEG--------FWNTLLPRLVK----AIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            FP  SAID L+++     P++ EG           T L  L K    A  +    +  FETPE  DRDKF WFRDEEF+RQT+AG+NP SI+L+TE+P+KS LD   YGP +S IT E++E++I  +++ +EA++ KKLF+LDYHDL LPYV KVR+L  TTLYGSR +FFLT  GTLRPIAIEL
Sbjct:  354 FPSLSAIDQLYDDNFRNQPVQPEGGKLRFVIDLLETELLHLFKLEGAAFLEGIRRVFKFETPEIHDRDKFAWFRDEEFARQTIAGMNPMSIQLVTEFPIKSNLDEATYGPADSLITKEVVEEQIRRVMTADEAVQNKKLFMLDYHDLLLPYVHKVRKLDGTTLYGSRALFFLTADGTLRPIAIEL 538          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 8.147e-46
Identity = 97/185 (52.43%), Postives = 125/185 (67.57%), Query Frame = 1
Query:   22 FPYFSAIDALFNEGVNLPPLKQEG-----FWNTLLPRLVKAIEDTGDN-------ILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            FP  ++IDAL+++     P++ EG       + L   LV  ++  G         +  FETPE  D DK  WFRDEEF+RQTLAG+NP SI+L+TE P+ S LD   YGP +S IT ELIEK+I  +++ EEA+ QKKLF+LDYHDL LPYV +VR+L + T+YGSRT+FFL   GTLRPIAIEL
Sbjct:  353 FPTLASIDALYDDDFRNQPVQPEGGKVRLILDLLAKELVHLVKLEGAEFVEGIRRVFKFETPEIHDMDKLAWFRDEEFARQTLAGMNPLSIQLVTELPIVSKLDELKYGPADSLITKELIEKQINRIMTAEEAVAQKKLFMLDYHDLLLPYVHRVRKLDNKTMYGSRTLFFLADDGTLRPIAIEL 537          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 7.386e-39
Identity = 79/178 (44.38%), Postives = 118/178 (66.29%), Query Frame = 1
Query:   10 PDL-GFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            PD+  F  F  +D LF EG+ L     +  +  +    V+ I++  + +L ++TP+ + +DKF W RD+EF+RQ LAG+NP +I  +  +P  S LDP +YGPPESAIT E I   + GM SV+EA++  +L++LDYHD+FLP+++++        YG+R +FFLT AGTL+PIAIEL
Sbjct:  337 PDIRDFAGFHDVDNLFKEGLRLKQALHDQLFQKI--PFVRKIQENSEGLLRYDTPDIIKKDKFAWLRDDEFARQALAGINPVNIERLQAFPPVSKLDPAVYGPPESAITEEHIIGHLDGM-SVQEAVEGSRLYMLDYHDIFLPFLDRINAQDGRKAYGTRAVFFLTAAGTLKPIAIEL 511          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.376e-37
Identity = 77/173 (44.51%), Postives = 116/173 (67.05%), Query Frame = 1
Query:   22 FPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            F  F  ID L+ EG+ L    QE  +  +   LV+ I+++ + +L ++TP  + +DKF W RD+EF+RQ +AG+NP +I  +  +P  S LDP IYGPPES+IT   I   + G ++V++A+ + KLFI+DYHD +LP+++++  +     Y +RTIFFLT AGTL+PIAIEL
Sbjct:  356 FQGFHHIDNLYKEGLRLKLGLQEHLFQKI--PLVQKIQESSEGMLRYDTPSILSKDKFAWLRDDEFARQAVAGINPVNIERLQVFPPVSKLDPAIYGPPESSITETHIAGHLNG-LTVQQAMDEAKLFIVDYHDAYLPFLDRINAIDGRKAYATRTIFFLTEAGTLKPIAIEL 525          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.643e-36
Identity = 72/175 (41.14%), Postives = 119/175 (68.00%), Query Frame = 1
Query:   22 FPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPP-ESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            F  F  ID+L+ EG+ L    Q+  +    LP++V  ++ + + +L ++TP+ + +DK+ W RD+EF+RQ +AG+NP +I  +T +P  S LDPEIYGP   SA+T + I  ++ G ++V++A++  +LF++DYHD++LP+++++  L     Y +RTI FLT  GTL+PIAIEL
Sbjct:  364 FANFGEIDSLYKEGLLLKLGFQDDMFKKFPLPKIVTTLQKSSEGLLRYDTPKIVSKDKYAWLRDDEFARQAIAGINPVNIERVTSYPPVSNLDPEIYGPGLHSALTEDHIIGQLDG-LTVQQALETNRLFMVDYHDIYLPFLDRINALDGRKAYATRTILFLTRLGTLKPIAIEL 537          
BLAST of CX287114 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.883e-34
Identity = 72/175 (41.14%), Postives = 116/175 (66.29%), Query Frame = 1
Query:   22 FPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPRLV-KAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL 540
            F  F  ID L+ EG+ L    Q+  +    LP++V   ++++   +L ++TP+ + +DK  W RD+EF+RQ +AG+NP +I  +  +P  S LDP+IYGP  SA+T + I   + G  SV++A+++ +L++LDYHD+FLP+++++  L     Y +RTIFFLT  GTL+P+AIEL
Sbjct:  358 FADFGEIDRLYKEGLLLKLGFQDDIFKKFPLPKVVVDTLQESTKGLLKYDTPKILSKDKNAWLRDDEFARQAIAGINPVNIERVKTFPPVSNLDPKIYGPQHSALTDDHIIGHLDG-FSVQQALEENRLYMLDYHDIFLPFLDRINALDGRKAYATRTIFFLTRLGTLKPVAIEL 531          
The following BLAST results are available for this feature:
BLAST of CX287114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOXC2_ORYSJ4.165e-5859.89Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX23_HORVU1.481e-5557.30Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX2_ARATH4.310e-5558.19Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOXC1_ORYSJ1.638e-5457.06Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX21_HORVU1.137e-4753.51Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX22_HORVU8.147e-4652.43Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX5_ORYSJ7.386e-3944.38Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ2.376e-3744.51Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX4_ARATH7.643e-3641.14Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH1.883e-3441.14Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01004H02SK Veg1 Citrus clementina cDNA clone C01004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287114 ID=CX287114; Name=CX287114; organism=Citrus clementina; type=EST; length=541bp
CGAGGCGATCCTGATCTGGGGTTTCCATACTTCTCTGCTATTGACGCACT
CTTCAATGAAGGAGTCAACTTGCCTCCACTCAAACAGGAAGGTTTTTGGA
ACACACTGCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGGAGATAAT
ATTTTGCTGTTTGAGACGCCAGAAACAATGGACAGAGACAAATTCTTTTG
GTTTAGGGATGAGGAATTTTCTAGGCAAACTCTCGCTGGTCTCAACCCGT
ATAGCATAAGGTTGATCACGGAATGGCCGTTGAAAAGCACACTCGATCCT
GAAATTTACGGACCACCAGAATCAGCAATTACCACAGAATTGATTGAAAA
AGAAATTGGAGGAATGATTTCTGTTGAAGAGGCTATAAAACAAAAGAAGT
TGTTCATCTTAGATTACCATGACCTATTTTTACCATATGTGGAAAAAGTG
AGACAACTCAAAAGCACAACGTTGTATGGATCTCGCACAATTTTCTTCCT
AACACCAGCCGGCACATTGAGACCAATAGCTATTGAGCTCA
back to top