CX287200

Overview
NameCX287200
Unique NameCX287200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287200_ssr569 microsatellite CX287200_ssr569:569..580. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4071 contig Ccv1_Contig4071:440..1076. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287200 vs. ExPASy Swiss-Prot
Match: IFRH_ARATH (Isoflavone reductase homolog P3 OS=Arabidopsis thaliana GN=At1g75280 PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 1.871e-72
Identity = 130/183 (71.04%), Postives = 158/183 (86.34%), Query Frame = 3
Query:   15 KSSFSIKAQIRRAVEAEGIPHTYVASNCFAGYFLPTLCQ--PGVSVPPRDKLTILGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKVYVPEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVEEYLHQF 557
            KS+F+ K QIRR +EAEGIP+TY  + CF GY+LPTL Q  PG++ PPRDK+TILGDGNAKAV NKE DIA +TIKAVDDPRTLNK+LYI+P  NT S NE+V LWEK IGK+L+K ++PE+QLLK+IQE+P+P+N+VL+INH+VFVNGD TN +IEPSFGVEASELYPDVKYT+V+EYL  F
Sbjct:  128 KSAFAGKIQIRRTIEAEGIPYTYAVTGCFGGYYLPTLVQFEPGLTSPPRDKVTILGDGNAKAVINKEEDIAAYTIKAVDDPRTLNKILYIKPSNNTLSMNEIVTLWEKKIGKSLEKTHLPEEQLLKSIQESPIPINVVLSINHAVFVNGD-TNISIEPSFGVEASELYPDVKYTSVDEYLSYF 309          
BLAST of CX287200 vs. ExPASy Swiss-Prot
Match: IFRH_SOLTU (Isoflavone reductase homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.795e-68
Identity = 122/182 (67.03%), Postives = 149/182 (81.87%), Query Frame = 3
Query:   15 KSSFSIKAQIRRAVEAEGIPHTYVASNCFAGYFLPTLCQPGVSVPPRDKLTILGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKVYVPEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVEEYLHQFV 560
            K++F+ KAQIRR VEAEGIP TYVA+  FAGY LP L QPG + PP DK+ ILG GN KAVFNKE DI T+TI AVDDP+TLNK+LYI+PP N  + NELV+LWEK  GK L+++YVPE+Q+LKNIQEA +P+N+ L+I H+ FV GD TNF IEPSFGVEASE+YPDVKYT ++E L+Q+V
Sbjct:  127 KAAFNTKAQIRRVVEAEGIPFTYVATFFFAGYSLPNLAQPGAAGPPNDKVVILGHGNTKAVFNKEEDIGTYTINAVDDPKTLNKILYIKPPHNIITLNELVSLWEKKTGKNLERLYVPEEQVLKNIQEASVPMNVGLSIYHTAFVKGDHTNFEIEPSFGVEASEVYPDVKYTPIDEILNQYV 308          
BLAST of CX287200 vs. ExPASy Swiss-Prot
Match: IFRH_TOBAC (Isoflavone reductase homolog A622 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.534e-61
Identity = 112/181 (61.88%), Postives = 141/181 (77.90%), Query Frame = 3
Query:   18 SSFSIKAQIRRAVEAEGIPHTYVASNCFAGYFLPTLCQPGVSVPPRDKLTILGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKVYVPEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVEEYLHQFV 560
            S F++K +IRR +EAEGIP+TYV  N FA +FLP L Q     PPRDK+ I GDGN KA++ KE DIAT+TI+AVDDPRTLNK L++RPP N  SFNE+V+LWE  IGKTL+K+Y+ E+ +L+ +QE PLPL   LAI HSVFVNGD  NF ++P  GVEA+ELYP VKYTTV+E+ ++FV
Sbjct:  130 SLFALKVRIRRMIEAEGIPYTYVICNWFADFFLPNLGQLEAKTPPRDKVVIFGDGNPKAIYVKEEDIATYTIEAVDDPRTLNKTLHMRPPANILSFNEIVSLWEDKIGKTLEKLYLSEEDILQIVQEGPLPLRTNLAICHSVFVNGDSANFEVQPPTGVEATELYPKVKYTTVDEFYNKFV 310          
BLAST of CX287200 vs. ExPASy Swiss-Prot
Match: IFRH_MAIZE (Isoflavone reductase homolog IRL OS=Zea mays GN=IRL PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.473e-58
Identity = 109/182 (59.89%), Postives = 136/182 (74.73%), Query Frame = 3
Query:   15 KSSFSIKAQIRRAVEAEGIPHTYVASNCFAGYFLPTLCQPGVSVPPRDKLTILGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKVYVPEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVEEYLHQFV 560
            KS    K  IRRA EA GIP+TY  +  FAG+ LP + Q     PP DK  +LGDG+ KAVF +E DIAT+T+ A DDPR  NKVLYI+PP NT S NEL++LWEK  GKT  + YVPE+ +LK IQE+P+PLNI+LAI H+ FV G+QT F I+P+ GV+ASELYPDVKYTTV+EYL++F+
Sbjct:  128 KSILGAKVGIRRATEAAGIPYTYAVAGFFAGFGLPKVGQVLAPGPPADKAVVLGDGDTKAVFVEEGDIATYTVLAADDPRAENKVLYIKPPANTLSHNELLSLWEKKTGKTFRREYVPEEAVLKQIQESPIPLNIILAIGHAAFVRGEQTGFEIDPAKGVDASELYPDVKYTTVDEYLNRFL 309          
BLAST of CX287200 vs. ExPASy Swiss-Prot
Match: IFR_MEDSA (Isoflavone reductase OS=Medicago sativa GN=IFR PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.171e-52
Identity = 98/179 (54.75%), Postives = 129/179 (72.07%), Query Frame = 3
Query:   24 FSIKAQIRRAVEAEGIPHTYVASNCFAGYFLPTLCQPGVSVPPRDKLTILGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKVYVPEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVEEYLHQFV 560
            F  KA IRR +EAEG+P+TY+  + F GYFL  L Q   + PPRDK+ ILGDGN K  +  E D+ TFTI+A +DP TLNK ++IR P+N  + NE++ALWEK IGKTL+K YV E+Q+LK+IQE+  P N +LA+ HS  + GD   + I+P+  +EASE YPDV YTT +EYL+QFV
Sbjct:  141 FEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQLDTTDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPENYLTQNEVIALWEKKIGKTLEKTYVSEEQVLKDIQESSFPHNYLLALYHSQQIKGDAV-YEIDPAKDIEASEAYPDVTYTTADEYLNQFV 318          
BLAST of CX287200 vs. ExPASy Swiss-Prot
Match: IFR_PEA (Isoflavone reductase OS=Pisum sativum GN=IFR PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.855e-50
Identity = 95/179 (53.07%), Postives = 127/179 (70.95%), Query Frame = 3
Query:   24 FSIKAQIRRAVEAEGIPHTYVASNCFAGYFLPTLCQPGVSVPPRDKLTILGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKVYVPEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVEEYLHQFV 560
            F  KA IRR VE+EG+P+TY+  + F GYFL  L Q   + PPRDK+ ILGDGN +  +  E D+ T+TI+A +DP TLNK ++IR P N  + NE++ALWEK IGKTL+K YV E+Q+LK+IQ +  P N +LA+ HS  + GD   + I+P+  VEA + YPDVKYTT +EYL+QFV
Sbjct:  141 FEEKASIRRVVESEGVPYTYLCCHAFTGYFLRNLAQIDATDPPRDKVVILGDGNVRGAYVTEADVGTYTIRAANDPNTLNKAVHIRLPNNYLTANEVIALWEKKIGKTLEKTYVSEEQVLKDIQTSSFPHNYLLALYHSQQIKGDAV-YEIDPAKDVEAYDAYPDVKYTTADEYLNQFV 318          
BLAST of CX287200 vs. ExPASy Swiss-Prot
Match: IFR_CICAR (Isoflavone reductase OS=Cicer arietinum GN=IFR PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.795e-49
Identity = 95/179 (53.07%), Postives = 126/179 (70.39%), Query Frame = 3
Query:   24 FSIKAQIRRAVEAEGIPHTYVASNCFAGYFLPTLCQPGVSVPPRDKLTILGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKVYVPEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVEEYLHQFV 560
            F  KA IRR VEAEG+P+TY+  + F GYFL  L Q   + PPRDK+ ILGDGN K  +  E D+ T+TI+A +DPRTLNK ++IR P N  + NE+V+LWEK IGKTL+K Y+ E+++LK+I  +  P N +LA+ HS  + GD   + I+P+   EA +LYPDVKYTT +EYL QFV
Sbjct:  141 FDEKASIRRVVEAEGVPYTYLCCHAFTGYFLRNLAQFDATEPPRDKVIILGDGNVKGAYVTEADVGTYTIRAANDPRTLNKAVHIRLPHNYLTSNEVVSLWEKKIGKTLEKSYISEEKVLKDINVSTFPHNYLLALYHSQQIKGDAV-YEIDPAKDAEAYDLYPDVKYTTADEYLDQFV 318          
BLAST of CX287200 vs. ExPASy Swiss-Prot
Match: IFRH_LUPAL (Isoflavone reductase homolog OS=Lupinus albus PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.869e-42
Identity = 82/183 (44.81%), Postives = 117/183 (63.93%), Query Frame = 3
Query:   12 GKSSFSIKAQIRRAVEAEGIPHTYVASNCFAGYFLPTLCQPGVSVPPRDKLTILGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKVYVPEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVEEYLHQFV 560
            G+ +F  K  +R+A+E   IP TY+++NCFAGYF   L Q    +PPRDK+ + GDGN K V+  E D+AT+TIK +DDPRTLNK +Y+RPP+N  +  EL+  WE+LIGK L+K  + E   L  ++       + +   + +F  G  TNF I  + G EASELYP+V YT +++YL  +V
Sbjct:  131 GRVTFDEKMTVRKAIEEANIPFTYISANCFAGYFAGNLSQMKTLLPPRDKVLLYGDGNVKPVYMDEDDVATYTIKTIDDPRTLNKTVYLRPPENILTHKELIEKWEELIGKQLEKNSISEKDFLSTLKGLDFASQVGVGHFYHIFYEGCLTNFEIGEN-GEEASELYPEVNYTRMDQYLKVYV 312          
BLAST of CX287200 vs. ExPASy Swiss-Prot
Match: EGS1_OCIBA (Eugenol synthase 1 OS=Ocimum basilicum GN=EGS1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.552e-37
Identity = 78/176 (44.32%), Postives = 114/176 (64.77%), Query Frame = 3
Query:   33 KAQIRRAVEAEGIPHTYVASNCFAGYFLPTLCQPGVSVPPRDKLTILGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKVYVPEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVEEYLHQFV 560
            K  IRRA+E   IP+TYV++NCFA YF+  L +P     P+D++T+ G G AK   N E DI  +TIK   DPR LN+V+  RP  N  +  EL++ WEK IGK   K++VPE++++   +E P P NI +AI H +F++G   ++  + +  VEAS LYP++K+TT++E L  FV
Sbjct:  132 KRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTIDELLDIFV 303          
BLAST of CX287200 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.424e-37
Identity = 79/183 (43.17%), Postives = 106/183 (57.92%), Query Frame = 3
Query:   12 GKSSFSIKAQIRRAVEAEGIPHTYVASNCFAGYFLPTLCQPGVSVPPRDKLTILGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRPPKNTYSFNELVALWEKLIGKTLDKVYVPEDQLLKNIQEAPLPLNIVLAINHSVFVNGDQTNFAIEPSFGVEASELYPDVKYTTVEEYLHQFV 560
            G + +  K  +RRAVE  GIP T +  N  A +     C P    PP D+  I GDGN KA F    DI  FT+K +DD RTLNK ++ RP  N YS NEL +LWEK IG+TL +  V  D+LL +  E  +P +IV +  H +F+NG Q NF+I+    VE   LYPD K+ ++++    FV
Sbjct:  135 GLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYFIDGNDIGKFTMKTIDDIRTLNKNVHFRPSSNCYSINELASLWEKKIGRTLPRFTVTADKLLAHAAENIIPESIVSSFTHDIFINGCQVNFSIDEHSDVEIDTLYPDEKFRSLDDCYEDFV 317          
The following BLAST results are available for this feature:
BLAST of CX287200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
IFRH_ARATH1.871e-7271.04Isoflavone reductase homolog P3 OS=Arabidopsis tha... [more]
IFRH_SOLTU2.795e-6867.03Isoflavone reductase homolog OS=Solanum tuberosum ... [more]
IFRH_TOBAC2.534e-6161.88Isoflavone reductase homolog A622 OS=Nicotiana tab... [more]
IFRH_MAIZE4.473e-5859.89Isoflavone reductase homolog IRL OS=Zea mays GN=IR... [more]
IFR_MEDSA8.171e-5254.75Isoflavone reductase OS=Medicago sativa GN=IFR PE=... [more]
IFR_PEA5.855e-5053.07Isoflavone reductase OS=Pisum sativum GN=IFR PE=2 ... [more]
IFR_CICAR3.795e-4953.07Isoflavone reductase OS=Cicer arietinum GN=IFR PE=... [more]
IFRH_LUPAL5.869e-4244.81Isoflavone reductase homolog OS=Lupinus albus PE=2... [more]
EGS1_OCIBA2.552e-3744.32Eugenol synthase 1 OS=Ocimum basilicum GN=EGS1 PE=... [more]
LAR_DESUN7.424e-3743.17Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01005G12SK Veg1 Citrus clementina cDNA clone C01005G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287200 ID=CX287200; Name=CX287200; organism=Citrus clementina; type=EST; length=637bp
ATTCGGCACGAGGAAAAAGTTCATTCTCAATCAAGGCTCAAATCCGCCGT
GCTGTGGAGGCTGAAGGGATCCCCCACACTTACGTGGCCTCCAACTGCTT
TGCCGGCTATTTTCTTCCCACACTTTGCCAGCCTGGAGTGAGTGTTCCTC
CCAGAGACAAGCTCACCATCCTTGGCGATGGAAACGCTAAGGCCGTTTTC
AACAAGGAAACTGACATTGCAACCTTTACCATCAAAGCCGTGGACGATCC
AAGAACATTGAACAAGGTCCTCTACATCAGACCTCCTAAAAACACTTACT
CATTCAACGAGCTCGTCGCCCTTTGGGAGAAGTTGATTGGCAAAACTCTT
GACAAAGTCTATGTTCCAGAGGACCAACTTCTCAAGAACATCCAAGAGGC
TCCACTTCCGCTGAACATTGTGCTAGCAATCAATCACTCAGTCTTTGTGA
ATGGTGACCAGACCAACTTTGCCATCGAGCCGTCTTTTGGAGTGGAGGCT
TCGGAGCTATACCCTGATGTTAAGTACACCACTGTGGAAGAATACCTCCA
CCAATTTGTTTGAGCAATTTAATTAATTAAATCATCCATATCTGTAATCA
ACTTTAATTATAATAAGGGATTTGTCGCGTGCGATTT
back to top