CX287207

Overview
NameCX287207
Unique NameCX287207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15268 contig Ccv1_Contig15268:32..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287207 vs. ExPASy Swiss-Prot
Match: OXA1_ARATH (Mitochondrial inner membrane protein OXA1 OS=Arabidopsis thaliana GN=OXA1 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.626e-34
Identity = 80/191 (41.88%), Postives = 117/191 (61.26%), Query Frame = 3
Query:   81 MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGSSLNNSYGLGNFFHSQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAI-ANQXXXXXXXXXXXXDSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLM 650
            MA+R++L+ R+ L AR   P ++ I  + DH++ S  +  S+ + HSF+  RS  +S  +    G+           L P+ G AF RYMS+  G G++KI ++SD+A+V T++T+Q + A              DSF P+AALQ  ID +H FTGF WWASI+V T+LIR++TVPLLI Q+K T+KL LM
Sbjct:    1 MAFRQTLSIRSRLFARRNQPVYHIIPRESDHERDSFCQETSQRSYHSFLHQRSVNNSDFSKVSGGSL-------HLPLAPTSGFAFYRYMSSAPGVGSEKIGVMSDIAEVITDSTLQDVPAQAAAAVSEVTLAAADSFFPIAALQQCIDMVHTFTGFEWWASIVVATILIRSSTVPLLIKQMKDTTKLALM 184          
BLAST of CX287207 vs. ExPASy Swiss-Prot
Match: OXA1L_ARATH (Mitochondrial inner membrane protein OXA1-like OS=Arabidopsis thaliana GN=OXA1L PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.203e-23
Identity = 70/192 (36.46%), Postives = 103/192 (53.65%), Query Frame = 3
Query:   93 RSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGSSLNNSYGLGNFFHSQRVSQFSLVP-SVGSAFCRYMSTTVGEGADKIELISDVA-DVFTETTVQAIANQXXXXXXXXXXXX----DSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLM 650
            R +T R  L+ R   PS  ++I D   + KS     S T I   +       + N +  L + F  +    F+  P  +G + CR+MS+T  E +DK++ I  VA +V  +  ++A+                   DS  PVAALQH IDA+H+FTG NWWASI +TT+LIR  T+P+L+NQLK+T KL ++
Sbjct:    6 RGITKRVNLLQRRVYPSCGHLIRDDRDETKSGS---SDTMIREVL-------ARNGTNKLSSMFADRHYQSFATGPLGLGLSSCRHMSSTPPEWSDKVDGIDFVATEVVPDEIIEAVTTTSQAVVPAINEVAIAAADSAFPVAALQHLIDAVHSFTGLNWWASIALTTVLIRGVTIPILLNQLKATYKLNVL 187          
The following BLAST results are available for this feature:
BLAST of CX287207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
OXA1_ARATH1.626e-3441.88Mitochondrial inner membrane protein OXA1 OS=Arabi... [more]
OXA1L_ARATH2.203e-2336.46Mitochondrial inner membrane protein OXA1-like OS=... [more]
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Properties
Property NameValue
Genbank descriptionC01005H07SK Veg1 Citrus clementina cDNA clone C01005H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287207 ID=CX287207; Name=CX287207; organism=Citrus clementina; type=EST; length=650bp
AGATACTTCCCAGTACTACTTCACCTCAGCAACTTCTACTGACACGTTTC
CGTTACCTGAGCCCGTAGATTCTCGTAACAATGGCTTATCGGCGAAGCCT
GACTACGAGAGCAACCCTTATTGCTCGAGCTTATAATCCATCATTTAACT
ACATTATCTACGACCACGATCATAAACAAAAATCTCCTGATGAAACTTTG
TCTCGAACTAATATCCATAGCTTCATCCAATCGAGGTCGTTTGGAAGCAG
TTTAAATAATTCGTATGGGTTGGGTAATTTCTTCCACAGTCAAAGGGTTT
CACAGTTCTCTCTCGTTCCGAGTGTGGGTTCTGCTTTTTGTCGGTATATG
TCAACTACGGTTGGAGAAGGAGCAGATAAGATAGAATTGATCAGCGATGT
GGCTGATGTTTTCACGGAGACGACAGTGCAAGCTATTGCTAACCAAGCTC
CAGCTGTGAATGAGGTTGCCATTGCTGCTGCTGATTCTTTCTTGCCTGTT
GCAGCTCTACAGCATTTTATTGATGCAATGCATAATTTTACCGGCTTTAA
TTGGTGGGCTTCCATAATTGTGACAACTCTTTTGATTCGGACAGCAACTG
TTCCACTTTTGATCAATCAACTCAAATCAACTTCAAAATTGACCTTAATG
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