CX287212

Overview
NameCX287212
Unique NameCX287212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3057 contig Ccv1_Contig3057:151..531. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287212 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.711e-51
Identity = 103/128 (80.47%), Postives = 109/128 (85.16%), Query Frame = 1
Query:    1 KQS-SSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 381
            KQS +SFS + LK        I+AMAE +  T   EAPVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREG NLLKLARKEQCLALGTRLRSKYKI Y+FYR
Sbjct:   24 KQSLASFSPKQLKSTVSAPRPIRAMAE-EAATKEAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFYR 150          
BLAST of CX287212 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 9.742e-51
Identity = 102/117 (87.18%), Postives = 105/117 (89.74%), Query Frame = 1
Query:   43 APRTNTIKAMA--EGKTE--TPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 381
            A R ++I+A A  EGK    T TKEAP GFTPPELDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR
Sbjct:   42 ASRHHSIRAAAAAEGKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 158          
BLAST of CX287212 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.834e-50
Identity = 101/125 (80.80%), Postives = 105/125 (84.00%), Query Frame = 1
Query:   13 SFSV-RPLKHNAPRTNTIKAMAE-GKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 381
            SFS  + LK     T  I+AMAE     T  K AP GFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYR
Sbjct:   30 SFSTPKQLKSTVSVTRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYR 154          
BLAST of CX287212 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.134e-49
Identity = 100/130 (76.92%), Postives = 107/130 (82.31%), Query Frame = 1
Query:    1 KQSSSFSV---RPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 381
            KQSS+ S    +P    A  + + K  AE +T     EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR
Sbjct:   27 KQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV---EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 153          
BLAST of CX287212 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.031e-48
Identity = 94/113 (83.19%), Postives = 96/113 (84.96%), Query Frame = 1
Query:   43 APRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 381
            A R     + A       TKEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYR
Sbjct:   42 AIRAEKTDSSAAAAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYR 154          
BLAST of CX287212 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.653e-48
Identity = 97/124 (78.23%), Postives = 101/124 (81.45%), Query Frame = 1
Query:   13 SFSVRPLKHNAPRTNTIKAMAEGKTETPT-KEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 381
            S S RP   +  +T       E  +  P  KEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYR
Sbjct:   27 SSSHRPKSLSFTKTAIRAEKTESSSAAPAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYR 150          
BLAST of CX287212 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.609e-45
Identity = 85/96 (88.54%), Postives = 89/96 (92.71%), Query Frame = 1
Query:   94 PTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 381
            P + AP GF PP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGAAIMREGPNLLKLARKEQCLALG RLRSKYKI YQFYR
Sbjct:   56 PAEPAPAGFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYR 151          
BLAST of CX287212 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.364e-35
Identity = 75/114 (65.79%), Postives = 87/114 (76.32%), Query Frame = 1
Query:   43 APRTNTIKAMAEGKTETPTKEAPV-GFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 381
            A R   ++A AE       K A    +T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMR+GPNLLK  +KEQCLAL T+LR+K+K+   FYR
Sbjct:   27 ARRAVVVRAEAEAAPAAAKKAAEKPAWTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYR 140          
BLAST of CX287212 vs. ExPASy Swiss-Prot
Match: PSAD_CYAPA (Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.238e-29
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 1
Query:  106 APVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYR 381
            AP  F+ P L+ N P+PIFGGSTGGLLRKA+VEEFY ITW    E +FE+PTGGAAIMR G NLL+LARKEQC+ALG +L+ K+KI  Y+ YR
Sbjct:   70 APKPFSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLARKEQCIALGAQLKDKFKITDYKIYR 162          
BLAST of CX287212 vs. ExPASy Swiss-Prot
Match: PSAD_GUITH (Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.085e-25
Identity = 57/84 (67.86%), Postives = 67/84 (79.76%), Query Frame = 1
Query:  133 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYR 381
            L+   PSP F GSTGG LR A+ EE Y ITW SPKEQ+FEMPTGGAAIMR+G NLL LARKEQCLALGT++++ +KI  Y+ YR
Sbjct:    5 LNLQIPSPTFEGSTGGWLRAAETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLARKEQCLALGTQVKTSFKITDYKIYR 88          
The following BLAST results are available for this feature:
BLAST of CX287212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_NICSY5.711e-5180.47Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SPIOL9.742e-5187.18Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SOLLC2.834e-5080.80Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CUCSA3.134e-4976.92Photosystem I reaction center subunit II, chloropl... [more]
PSAD1_ARATH2.031e-4883.19Photosystem I reaction center subunit II-1, chloro... [more]
PSAD2_ARATH2.653e-4878.23Photosystem I reaction center subunit II-2, chloro... [more]
PSAD_HORVU1.609e-4588.54Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CHLRE3.364e-3565.79Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CYAPA1.238e-2966.67Photosystem I reaction center subunit II, cyanelle... [more]
PSAD_GUITH1.085e-2567.86Photosystem I reaction center subunit II OS=Guilla... [more]

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Properties
Property NameValue
Genbank descriptionC01006A01SK Veg1 Citrus clementina cDNA clone C01006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287212 ID=CX287212; Name=CX287212; organism=Citrus clementina; type=EST; length=381bp
AAGCAATCATCATCATTTTCAGTAAGGCCACTAAAACATAATGCCCCACG
TACCAACACCATCAAGGCCATGGCTGAGGGAAAAACAGAGACACCCACAA
AAGAGGCTCCGGTGGGCTTCACCCCACCAGAACTGGACCCCAACACCCCA
TCTCCGATCTTCGGAGGCAGCACCGGCGGGCTGCTGCGGAAGGCTCAGGT
GGAAGAGTTTTATGTGATCACATGGGAGTCTCCTAAGGAGCAAATATTTG
AAATGCCCACTGGGGGTGCGGCCATTATGAGAGAAGGTCCGAATTTGCTG
AAGCTGGCTAGGAAAGAGCAGTGCTTGGCTCTGGGGACAAGGCTGAGGTC
CAAGTACAAGATTAAGTACCAGTTTTACCGA
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