CX287216

Overview
NameCX287216
Unique NameCX287216
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX287216 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.795e-11
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 3 
Query:  237 SFLNDQLSKRTSIFGLRLWVVLGICVGAGIVLVLFLISLWFTSKRNSNNSKRQLNAAKXXXXXXXXXXXXXXPTIPNISKEIQEI 491
            +FLN +LSK TSIFGLRLWVV+GI +G+ IV+ LFL+SL  TS+R +   +    +A                  P ISKEI+EI
Sbjct:    7 AFLNTELSKPTSIFGLRLWVVIGILLGSLIVIALFLLSLCLTSRRKNRKPRADFASAAI--------------ATPPISKEIKEI 77
The following BLAST results are available for this feature:
BLAST of CX287216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1154_ARATH6.795e-1145.88Probable serine/threonine-protein kinase At1g01540... [more]
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Properties
Property NameValue
Genbank descriptionC01006A06SK Veg1 Citrus clementina cDNA clone C01006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287216 ID=CX287216; Name=CX287216; organism=Citrus clementina; type=EST; length=551bp
GTCACAAAAAACACACTAATGGGTAATGGGGTTTTATCTCCGTTCTAGAA
GTCCCATCATGCCAGCTCTGTCTCTCAAAACAAAATGACCTCATTTAACC
TCGTCTCTGCCCGCTGCAGCAAGTGCTAGTCCGAACAAAATACGACACGC
CACACTCTGTCTCTCTGCTTCTTGTTTTCATGAAATTAGGAGCCGAAATT
TGACTCACAAAGGGCTTTGCTGCAATGTCTCATTACTCGTTCTTGAACGA
TCAGCTCTCTAAGAGAACCTCAATTTTCGGGTTACGTTTATGGGTTGTTC
TTGGTATTTGCGTAGGAGCTGGAATAGTTCTAGTTCTCTTCCTCATATCT
CTTTGGTTCACTTCAAAACGCAATAGCAACAACTCAAAACGACAACTCAA
CGCTGCCAAGTCATCCTCTCTCTGCAGCAACTACAACAGCAGCAGCGGCA
ACCCAACAATTCCAAACATTTCCAAAGAAATTCAAGAAATCCGAATCGAG
CCGGACTCCAACTCGAACTCCAACTGCAAACCTCATTCCGCGCCAAATCC
T
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