CX287221

Overview
NameCX287221
Unique NameCX287221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287221_ssr205 microsatellite CX287221_ssr205:205..226. BLAST: Citrus ESTs to Prunus persica proteins V1
CX287221_ssr244 microsatellite CX287221_ssr244:244..255. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig562 contig Ccv1_Contig562:28..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287221 vs. ExPASy Swiss-Prot
Match: GDL79_ARATH (GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.303e-34
Identity = 61/86 (70.93%), Postives = 76/86 (88.37%), Query Frame = -1
Query:  258 NFISNPRAFGFTTSKVACCGQGPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMALDSRT 515
            +FIS+P+A+GF TSKVACCGQGPYNG+GLCTP SNLCPNR+++AFWDPFHPSE+A+  I Q+ + GS EYM+PMNLSTI+ +DS T
Sbjct:  281 DFISDPQAYGFVTSKVACCGQGPYNGIGLCTPLSNLCPNRDLFAFWDPFHPSEKASRIIAQQILNGSPEYMHPMNLSTILTVDSMT 366          
BLAST of CX287221 vs. ExPASy Swiss-Prot
Match: LTL1_ARATH (GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana GN=LTL1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.465e-34
Identity = 60/84 (71.43%), Postives = 73/84 (86.90%), Query Frame = -1
Query:  264 NFISNPRAFGFTTSKVACCGQGPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMALDS 515
            +++SNP  FGF TSKVACCGQGPYNG+GLCTP SNLCPNR++YAFWD FHP+E+AN  IV + +TGS++YM+PMNLST M LDS
Sbjct:  280 DYLSNPEQFGFVTSKVACCGQGPYNGIGLCTPVSNLCPNRDLYAFWDAFHPTEKANRIIVNQILTGSSKYMHPMNLSTAMLLDS 363          
BLAST of CX287221 vs. ExPASy Swiss-Prot
Match: GDL67_ARATH (GDSL esterase/lipase At4g28780 OS=Arabidopsis thaliana GN=At4g28780 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.881e-33
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = -1
Query:  261 NFISNPRAFGFTTSKVACCGQGPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMALDSR 515
            +FI+NP+ FGF TSKVACCGQG YNG G+CTP S LC +RN YAFWDPFHP+E+A   IVQ+ MTGS EYM PMNLSTIMALDSR
Sbjct:  282 DFINNPQRFGFVTSKVACCGQGAYNGQGVCTPLSTLCSDRNAYAFWDPFHPTEKATRLIVQQIMTGSVEYMNPMNLSTIMALDSR 366          
BLAST of CX287221 vs. ExPASy Swiss-Prot
Match: GDL77_ARATH (GDSL esterase/lipase At5g18430 OS=Arabidopsis thaliana GN=At5g18430 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.320e-30
Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = -1
Query:  270 NFISNPRAFGFTTSKVACCGQGPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMAL 515
            +F+S PR +GF TSKVACCGQGPYNG+GLCT  SNLCPNR +Y FWD FHP+E+AN  IV+  +TG+T+YM PMNLS+ +AL
Sbjct:  281 DFLSTPRRYGFVTSKVACCGQGPYNGMGLCTVLSNLCPNRELYVFWDAFHPTEKANRMIVRHILTGTTKYMNPMNLSSALAL 362          
BLAST of CX287221 vs. ExPASy Swiss-Prot
Match: GDL38_ARATH (GDSL esterase/lipase At2g23540 OS=Arabidopsis thaliana GN=At2g23540 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.268e-13
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = -1
Query:  279 ISNPRAFGFTTSKVACCGQG-PYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTI 509
            I+N   +GF ++  ACCG G  Y G+  C P S+LC  R+ Y FWDP+HPSE AN  I ++ + G  + + P+NLS +
Sbjct:  307 ITNYDKYGFKSATKACCGNGGQYAGIIPCGPTSSLCEERDKYVFWDPYHPSEAANVIIAKQLLYGDVKVISPVNLSKL 384          
BLAST of CX287221 vs. ExPASy Swiss-Prot
Match: GLIP7_ARATH (GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=GLIP7 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.656e-13
Identity = 32/83 (38.55%), Postives = 43/83 (51.81%), Query Frame = -1
Query:  270 YNFISNPRAFGFTTSKVACCGQGPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMAL 518
            ++ + NP  +G   S  ACCG G Y G   C P    C +RN Y FWD FHP+E AN  I     + S  Y YP+++  +  L
Sbjct:  282 HDMVVNPSRYGLVVSNEACCGNGRYGGALTCLPLQQPCLDRNQYVFWDAFHPTETANKIIAHNTFSKSANYSYPISVYELAKL 364          
BLAST of CX287221 vs. ExPASy Swiss-Prot
Match: GDL28_ARATH (GDSL esterase/lipase At1g71250 OS=Arabidopsis thaliana GN=At1g71250 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.162e-13
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = -1
Query:  270 NFISNPRAFGFTTSKVACCGQGPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMAL 515
            + ++NP A+GF+    ACCG G   G   C P    CPNRN Y FWD FHP++ AN  + +    G     YP+N+  +  L
Sbjct:  292 DILNNPAAYGFSVVDRACCGIGRNQGQITCLPLQTPCPNRNQYVFWDAFHPTQTANSILARRAFYGPPSDAYPVNVQQMTLL 373          
BLAST of CX287221 vs. ExPASy Swiss-Prot
Match: GDL29_ARATH (GDSL esterase/lipase At1g71691 OS=Arabidopsis thaliana GN=At1g71691 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.291e-13
Identity = 30/83 (36.14%), Postives = 45/83 (54.22%), Query Frame = -1
Query:  267 NFISNPRAFGFTTSKVACCGQGPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMALD 515
            + ++N  A+G TT    CCG G   G   C P    CPNR+ Y FWD FHP+E+ N  + ++   G     YP+N+  + +L+
Sbjct:  302 DIVANQAAYGLTTMDKGCCGIGKNRGQITCLPFETPCPNRDQYVFWDAFHPTEKVNLIMAKKAFAGDRTVAYPINIQQLASLN 384          
BLAST of CX287221 vs. ExPASy Swiss-Prot
Match: GDL64_ARATH (GDSL esterase/lipase At4g16230 OS=Arabidopsis thaliana GN=At4g16230 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.217e-13
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = -1
Query:  270 NFISNPRAFGFTTSKVACCGQ-GPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMAL 515
            + I N  ++GF + K+ CC   G   GL  C P S +C +R+ Y FWDP+HP+E AN  I +  ++G T  +YP+N+  +  L
Sbjct:  282 DIIQNYSSYGFESEKIPCCSLVGKVGGLIPCGPPSKVCMDRSKYVFWDPYHPTEAANIIIARRLLSGDTSDIYPINIRQLANL 364          
BLAST of CX287221 vs. ExPASy Swiss-Prot
Match: GDL15_ARATH (GDSL esterase/lipase At1g29670 OS=Arabidopsis thaliana GN=At1g29670 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.085e-12
Identity = 33/83 (39.76%), Postives = 43/83 (51.81%), Query Frame = -1
Query:  270 NFISNPRAFGFTTSKVACCGQGPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIV-QEFMTGSTEYMYPMNLSTIMAL 515
            + I+NP  FGF  +   CCG G   G   C P    C +RN Y FWD FHP+E AN  I  + +   S    YPM++S +  L
Sbjct:  281 DMITNPARFGFRVTNAGCCGIGRNAGQITCLPGQRPCRDRNAYVFWDAFHPTEAANVIIARRSYNAQSASDAYPMDISRLAQL 363          
The following BLAST results are available for this feature:
BLAST of CX287221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GDL79_ARATH1.303e-3470.93GDSL esterase/lipase At5g33370 OS=Arabidopsis thal... [more]
LTL1_ARATH6.465e-3471.43GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana ... [more]
GDL67_ARATH1.881e-3374.12GDSL esterase/lipase At4g28780 OS=Arabidopsis thal... [more]
GDL77_ARATH3.320e-3067.07GDSL esterase/lipase At5g18430 OS=Arabidopsis thal... [more]
GDL38_ARATH1.268e-1343.59GDSL esterase/lipase At2g23540 OS=Arabidopsis thal... [more]
GLIP7_ARATH1.656e-1338.55GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=... [more]
GDL28_ARATH2.162e-1339.02GDSL esterase/lipase At1g71250 OS=Arabidopsis thal... [more]
GDL29_ARATH6.291e-1336.14GDSL esterase/lipase At1g71691 OS=Arabidopsis thal... [more]
GDL64_ARATH8.217e-1338.55GDSL esterase/lipase At4g16230 OS=Arabidopsis thal... [more]
GDL15_ARATH9.085e-1239.76GDSL esterase/lipase At1g29670 OS=Arabidopsis thal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01006A12SK Veg1 Citrus clementina cDNA clone C01006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287221 ID=CX287221; Name=CX287221; organism=Citrus clementina; type=EST; length=518bp
AACAGAAGTAAGATTTCATTGAACATTACGCATACAATTGGCCAATATCA
TAAGTTACTACAGCAACGAAAAATCACAAAAGGCAACAAACAGTAGTACG
GGTTTGAAGATACATATTATTCTCAACACAGACACACGCAGCATTAATGG
CCCTAATTGCCTTGAAACAGGCCGATATATATTAGCTCTGTGTGTGTATG
TGTGTATATATATATATATATATATATGTATATGTAACAAAGGTGATTGA
TTGATTATGTCCTTGAATCCAAGGCCATGATGGTGCTGAGATTCATGGGA
TACATGTACTCAGTCGAACCAGTCATGAATTCTTGAACAATAAATCCATT
TGCTCTTTCAGATGGATGAAATGGATCCCAAAATGCATACACATTTCTAT
TTGGGCATAAGTTGGATGCCGGAGTGCACAATCCTAGGCCATTGTATGGC
CCTTGCCCGCAACATGCAACCTTTGATGTTGTAAATCCGAACGCTCGAGG
GTTACTGATGAAGTTATA
back to top