CX287224

Overview
NameCX287224
Unique NameCX287224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287224 vs. ExPASy Swiss-Prot
Match: ELOC_RAT (Transcription elongation factor B polypeptide 1 OS=Rattus norvegicus GN=Tceb1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.894e-18
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  117 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYSRGKE--TDFHIEPELTLELMMAANYL 386
            VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF + ++Y+       +F I PE+ LEL+MAAN+L
Sbjct:   19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110          
BLAST of CX287224 vs. ExPASy Swiss-Prot
Match: ELOC_MOUSE (Transcription elongation factor B polypeptide 1 OS=Mus musculus GN=Tceb1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.894e-18
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  117 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYSRGKE--TDFHIEPELTLELMMAANYL 386
            VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF + ++Y+       +F I PE+ LEL+MAAN+L
Sbjct:   19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110          
BLAST of CX287224 vs. ExPASy Swiss-Prot
Match: ELOC_HUMAN (Transcription elongation factor B polypeptide 1 OS=Homo sapiens GN=TCEB1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.894e-18
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  117 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYSRGKE--TDFHIEPELTLELMMAANYL 386
            VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF + ++Y+       +F I PE+ LEL+MAAN+L
Sbjct:   19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110          
BLAST of CX287224 vs. ExPASy Swiss-Prot
Match: ELOC_BOVIN (Transcription elongation factor B polypeptide 1 OS=Bos taurus GN=TCEB1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.894e-18
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  117 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYSRGKE--TDFHIEPELTLELMMAANYL 386
            VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF + ++Y+       +F I PE+ LEL+MAAN+L
Sbjct:   19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110          
BLAST of CX287224 vs. ExPASy Swiss-Prot
Match: ELOC_SCHPO (Elongin-C OS=Schizosaccharomyces pombe GN=elc1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.615e-15
Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  105 KEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYSRGKE-TDFHIEPELTLELMMAANYL 386
            +++ V+LIS +GF F++ KE A +S TIR +L   G F+E +  E TFP+I  T+LEK+C+Y +++ +Y    +   F I PE+ LEL++ A YL
Sbjct:    2 EKEYVRLISGDGFVFILEKEIACLSGTIRAILNE-GIFSEAQKNECTFPDIRATLLEKVCEYLHYNYRYKNQLDIPKFDIPPEMVLELLVTAEYL 95          
BLAST of CX287224 vs. ExPASy Swiss-Prot
Match: ELOC_DICDI (Transcription elongation factor B polypeptide 1 OS=Dictyostelium discoideum GN=tceb1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.379e-12
Identity = 37/97 (38.14%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  111 DTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGG-FAETEHGEVTFPEISTTILEKICQYFYWSLQYSRGKE--TDFHIEPELTLELMMAANYLHT 392
            D ++L S+ G EFV+S++ + VS TI++ML+     F E ++ E+ F EIST +LEK+ QYFY+  +Y+       +F I  ++ ++L++AA++L T
Sbjct:   13 DVLRLYSSTGHEFVLSRKMSYVSGTIKSMLSGDNSNFMEDQNNEIRFREISTPVLEKVIQYFYFKNKYTNSTTDLPEFPINEKVVVDLLLAAHFLDT 109          
The following BLAST results are available for this feature:
BLAST of CX287224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELOC_RAT4.894e-1847.83Transcription elongation factor B polypeptide 1 OS... [more]
ELOC_MOUSE4.894e-1847.83Transcription elongation factor B polypeptide 1 OS... [more]
ELOC_HUMAN4.894e-1847.83Transcription elongation factor B polypeptide 1 OS... [more]
ELOC_BOVIN4.894e-1847.83Transcription elongation factor B polypeptide 1 OS... [more]
ELOC_SCHPO6.615e-1542.11Elongin-C OS=Schizosaccharomyces pombe GN=elc1 PE=... [more]
ELOC_DICDI1.379e-1238.14Transcription elongation factor B polypeptide 1 OS... [more]
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Properties
Property NameValue
Genbank descriptionC01006B03SK Veg1 Citrus clementina cDNA clone C01006B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287224 ID=CX287224; Name=CX287224; organism=Citrus clementina; type=EST; length=517bp
AACACTCAACCGCAGGCCCCGAGTTGCGATCGTTTGTTTGCGCCTACTTG
AATAAAATCGAAGGTCATCGTTACCGGAGGCCATAATAAGAGAGCAAGAT
GAAGAAAGAAGATACAGTGAAGCTTATTAGCGCGGAGGGATTCGAGTTCG
TGATATCCAAAGAAGCCGCCATGGTCTCTCAAACCATCCGCAACATGCTC
ACCTCTCCAGGTGGTTTTGCTGAAACAGAGCACGGAGAAGTGACGTTCCC
TGAGATAAGCACCACCATTCTTGAGAAGATTTGTCAATACTTTTACTGGT
CTCTTCAGTATTCCAGGGGCAAGGAGACTGATTTCCACATTGAGCCTGAA
CTAACTTTGGAGCTGATGATGGCTGCTAACTATCTCCATACTTGAGCCAA
GCAGTGTTCTTACTTCATGAGCAGCAAGTTCTTTGCCATCGCAAGCTTTC
TGCTCCTTGTCTGGTTATCACAAACTGATTAATCATTTAGTTACCATCAT
GATTGTTTCACCTTTCT
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