CX287227

Overview
NameCX287227
Unique NameCX287227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length185
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15333 contig Ccv1_Contig15333:286..469. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287227 vs. ExPASy Swiss-Prot
Match: CAH2_FLALI (Carbonic anhydrase 2 (Fragment) OS=Flaveria linearis PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.598e-21
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 2
Query:    2 NPDLYGALAKGQSPKLLVFACSDSRGCPCHMLNFQPGEAFMVRNIANMVPPYDAEK 169
            NP LYG LAKGQSPK LVFACSDSR CP H+L+FQPGEAF+VRNIANMVPPYD  K
Sbjct:    1 NPTLYGELAKGQSPKFLVFACSDSRVCPSHILDFQPGEAFVVRNIANMVPPYDTIK 56          
BLAST of CX287227 vs. ExPASy Swiss-Prot
Match: CAHC_TOBAC (Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.671e-20
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 2
Query:    2 NPDLYGALAKGQSPKLLVFACSDSRGCPCHMLNFQPGEAFMVRNIANMVPPYD 160
            NP LYG L+KGQSPK +VFACSDSR CP H+LNFQPGEAF+VRNIANMVP YD
Sbjct:  132 NPALYGELSKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFVVRNIANMVPAYD 184          
BLAST of CX287227 vs. ExPASy Swiss-Prot
Match: CAHC_ARATH (Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.671e-20
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 2
Query:    2 NPDLYGALAKGQSPKLLVFACSDSRGCPCHMLNFQPGEAFMVRNIANMVPPYDAEK 169
            NP LYG LAKGQSPK +VFACSDSR CP H+L+FQPG+AF+VRNIANMVPP+D  K
Sbjct:  147 NPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVK 202          
BLAST of CX287227 vs. ExPASy Swiss-Prot
Match: CAHC_PEA (Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.133e-19
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 2
Query:    2 NPDLYGALAKGQSPKLLVFACSDSRGCPCHMLNFQPGEAFMVRNIANMVPPYDAEK 169
            NP LYG LAKGQSP  +VFACSDSR CP H+L+FQPGEAF+VRN+AN+VPPYD  K
Sbjct:  139 NPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAK 194          
BLAST of CX287227 vs. ExPASy Swiss-Prot
Match: CAHX_FLABR (Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.932e-19
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 2
Query:    2 NPDLYGALAKGQSPKLLVFACSDSRGCPCHMLNFQPGEAFMVRNIANMVPPYDAEK 169
            NP LY  LAKGQSPK +VFACSDSR CP H+L+FQPGEAF+VRN+ANMVPP+D  K
Sbjct:  141 NPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPFDKTK 196          
BLAST of CX287227 vs. ExPASy Swiss-Prot
Match: CAHX_FLABI (Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.932e-19
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 2
Query:    2 NPDLYGALAKGQSPKLLVFACSDSRGCPCHMLNFQPGEAFMVRNIANMVPPYDAEK 169
            NP LY  LAKGQSPK +VFACSDSR CP H+L+FQPGEAF+VRN+ANMVPP+D  K
Sbjct:  141 NPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPFDKTK 196          
BLAST of CX287227 vs. ExPASy Swiss-Prot
Match: CAHC_SPIOL (Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.932e-19
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 2
Query:    2 NPDLYGALAKGQSPKLLVFACSDSRGCPCHMLNFQPGEAFMVRNIANMVPPYDAEK 169
            NP LYG L+KGQ+PK +VFACSDSR CP H+L+FQPGEAFMVRNIANMVP +D +K
Sbjct:  130 NPALYGELSKGQAPKFMVFACSDSRVCPSHVLDFQPGEAFMVRNIANMVPVFDKDK 185          
BLAST of CX287227 vs. ExPASy Swiss-Prot
Match: CAH1_FLALI (Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.932e-19
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 2
Query:    2 NPDLYGALAKGQSPKLLVFACSDSRGCPCHMLNFQPGEAFMVRNIANMVPPYDAEK 169
            NP LY  LAKGQSPK +VFACSDSR CP H+L+FQPGEAF+VRN+ANMVPP+D  K
Sbjct:  141 NPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPFDKTK 196          
BLAST of CX287227 vs. ExPASy Swiss-Prot
Match: CAHX_FLAPR (Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.523e-19
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 2
Query:    2 NPDLYGALAKGQSPKLLVFACSDSRGCPCHMLNFQPGEAFMVRNIANMVPPYDAEK 169
            NP LY  LAKGQSPK +VFACSDSR CP H+L+FQPGEAF+VRN+ANMVPP+D  K
Sbjct:  140 NPVLYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPFDKTK 195          
BLAST of CX287227 vs. ExPASy Swiss-Prot
Match: CAH2_ARATH (Carbonic anhydrase 2 OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.295e-19
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 2
Query:    2 NPDLYGALAKGQSPKLLVFACSDSRGCPCHMLNFQPGEAFMVRNIANMVPPYDAEK 169
            NP LYG LAKGQSPK +VFACSDSR CP H+L+F PG+AF+VRNIANMVPP+D  K
Sbjct:   70 NPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVK 125          
The following BLAST results are available for this feature:
BLAST of CX287227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CAH2_FLALI4.598e-2182.14Carbonic anhydrase 2 (Fragment) OS=Flaveria linear... [more]
CAHC_TOBAC8.671e-2081.13Carbonic anhydrase, chloroplastic OS=Nicotiana tab... [more]
CAHC_ARATH8.671e-2076.79Carbonic anhydrase, chloroplastic OS=Arabidopsis t... [more]
CAHC_PEA1.133e-1975.00Carbonic anhydrase, chloroplastic OS=Pisum sativum... [more]
CAHX_FLABR1.932e-1975.00Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1[more]
CAHX_FLABI1.932e-1975.00Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2[more]
CAHC_SPIOL1.932e-1975.00Carbonic anhydrase, chloroplastic OS=Spinacia oler... [more]
CAH1_FLALI1.932e-1975.00Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=... [more]
CAHX_FLAPR2.523e-1975.00Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1[more]
CAH2_ARATH3.295e-1975.00Carbonic anhydrase 2 OS=Arabidopsis thaliana GN=CA... [more]

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Properties
Property NameValue
Genbank descriptionC01006B07SK Veg1 Citrus clementina cDNA clone C01006B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287227 ID=CX287227; Name=CX287227; organism=Citrus clementina; type=EST; length=185bp
GAATCCTGATTTGTACGGTGCACTGGCCAAAGGCCAAAGCCCCAAGCTTC
TGGTATTTGCATGCTCAGACTCTCGAGGATGTCCATGCCATATGCTCAAT
TTTCAACCAGGAGAGGCGTTTATGGTTCGAAACATTGCCAATATGGTCCC
TCCATATGACGCAGAAAAAATACTCTGGAGCACGT
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