CX287229

Overview
NameCX287229
Unique NameCX287229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX287229 vs. ExPASy Swiss-Prot
Match: P2C48_ARATH (Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.555e-15
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 3 
Query:  375 MVSATFMKIVSPCWKPSTEGENSNSDGED-NGRVDGLLWYKDSGHHVSGEFSMA 533
            MVS TF +IVSPCW+P   GE+S+   +D NGR+DGLLWYKDSG+H++GEFSMA
Sbjct:    1 MVSTTFRRIVSPCWRPFGIGEDSSPGSDDTNGRLDGLLWYKDSGNHITGEFSMA 54
[Close]
BLAST of CX287229 vs. ExPASy Swiss-Prot
Match: P2C38_ARATH (Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.370e-12
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 3 
Query:  381 SATFMKIVSPCWK-PSTEGENSNSDGEDNGRVDGLLWYKDSGHHVSGEFSMA 533
            SAT +++V+PCW+ PS +G++S  D   NGR DGLLWYKDSG+HV+GEFSM+
Sbjct:    4 SATILRMVAPCWRRPSVKGDHSTRDA--NGRCDGLLWYKDSGNHVAGEFSMS 53
The following BLAST results are available for this feature:
BLAST of CX287229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
P2C48_ARATH5.555e-1566.67Probable protein phosphatase 2C 48 OS=Arabidopsis ... [more]
P2C38_ARATH3.370e-1261.54Probable protein phosphatase 2C 38 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC01006B09SK Veg1 Citrus clementina cDNA clone C01006B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287229 ID=CX287229; Name=CX287229; organism=Citrus clementina; type=EST; length=534bp
CAATTTTTTAAATTTTTTTTATAATTATCTCTGTTTTCTAGATCTGCCCT
TTTGATAAGACAGATTTCATTTTCCCTTTTTTTTTTGGTTTTAGATTTTT
TTGTTTATTTGTTGCTCTTGTTTTAGTCGTAATCAAATGATGGTCTCTTT
TGTGTTGAAGATATAAATTGGAGGATCATACAATTTTCCCACTTTAGGAT
TGACAAGATTAATGTTGTCTGCATCTATCAATGTGTGTTTGACTTTTGAG
ACTTCTGTTGCGTCTTTAAACATTGGGAAGATATCAGAAGAGATACCAGG
TTTTTTTCGAGTTGTTAATGTTGATTTCATGAATAATTCGATTGCTGGAT
CATTTGGATGATAATATGTGAGCTATGGTATCGGCAACTTTTATGAAAAT
TGTTTCACCCTGTTGGAAGCCATCTACTGAGGGTGAAAATTCTAATAGCG
ATGGGGAAGACAATGGTAGAGTTGATGGATTGTTGTGGTACAAGGATTCA
GGACATCATGTCAGTGGGGAATTCTCAATGGCAG
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