CX287231

Overview
NameCX287231
Unique NameCX287231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length452
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig64 contig Ccv1_Contig64:63..514. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287231 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 8.050e-39
Identity = 84/128 (65.62%), Postives = 93/128 (72.66%), Query Frame = 2
Query:   38 KPAPFTVEKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYXXXXXXXXXXXXXXXXXXXXXXXXVYNTSALAQ 412
            KPA FTVEK+AARGLPSL  A+ SFKIVA G  KIKTDKP+G+NG MDLR+G+DASGRK KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY                        VYNTSALAQ
Sbjct:   13 KPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140          
BLAST of CX287231 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.342e-38
Identity = 80/128 (62.50%), Postives = 93/128 (72.66%), Query Frame = 2
Query:   38 KPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYXXXXXXXXXXXXXXXXXXXXXXXXVYNTSALAQ 412
            KPAPF+VEK+A +GLPSLA++S  F++ A G  K+KTDKPYG+NG M LR+G+DASGRK KGKGVYQFVDKYGANVDGYSPIYN +DWSPSGDVY                        V+NTSALAQ
Sbjct:    9 KPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136          
BLAST of CX287231 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.983e-37
Identity = 82/129 (63.57%), Postives = 92/129 (71.32%), Query Frame = 2
Query:   38 KPAPFTVEKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYXXXXXXXXXXXXXXXXXXXXXXXXVYNTSALAQ 412
            KPA FTVEK +ARGLPSL +   +SF+IVA G  KIKTDKP+GVNG MDLR+G+DASGRK KG GVY+FVDKYGANVDGYSPIYNE++WS SGDVY                        VYNTSALAQ
Sbjct:   13 KPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141          
BLAST of CX287231 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 6.379e-36
Identity = 76/124 (61.29%), Postives = 90/124 (72.58%), Query Frame = 2
Query:   50 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYXXXXXXXXXXXXXXXXXXXXXXXXVYNTSALAQ 412
            FT+EK++ +GLPSLA++S  FK+VA G  K+KTDKPYG+NG M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY                        VYNTSALAQ
Sbjct:   15 FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138          
BLAST of CX287231 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.134e-35
Identity = 75/124 (60.48%), Postives = 88/124 (70.97%), Query Frame = 2
Query:   50 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYXXXXXXXXXXXXXXXXXXXXXXXXVYNTSALAQ 412
            FT+EK + +GLPSL ++S  FK+VA G  K+KTDKPYG+NG M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY                        VYNTSALAQ
Sbjct:   15 FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138          
BLAST of CX287231 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.588e-32
Identity = 73/129 (56.59%), Postives = 87/129 (67.44%), Query Frame = 2
Query:   38 KPAPFTVE-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYXXXXXXXXXXXXXXXXXXXXXXXXVYNTSALAQ 412
            KP+ F V+ KSA +GLPSL+++S  F + A G  KIK DKP G+ GGM LR+G+D+SGRK  GKGVYQFVDKYGANVDGYSPIYNE +W+P+GDVY                        VYNTSALAQ
Sbjct:   12 KPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140          
BLAST of CX287231 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.066e-25
Identity = 60/119 (50.42%), Postives = 73/119 (61.34%), Query Frame = 2
Query:   56 VEKSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYXXXXXXXXXXXXXXXXXXXXXXXXVYNTSALA 409
            +++S   G+   A+ S  IVAK  K ++T +PYG  GG+  +EG+DASGR AKGKGVYQF DKYGANVDGYSPIY   +WSPSGDVY                        VY+TSALA
Sbjct:   19 LQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137          
The following BLAST results are available for this feature:
BLAST of CX287231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSBR_ARATH8.050e-3965.63Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_TOBAC2.342e-3862.50Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM1.983e-3763.57Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU6.379e-3661.29Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC4.134e-3560.48Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL5.588e-3256.59Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_HORVU5.066e-2550.42Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC01006B11SK Veg1 Citrus clementina cDNA clone C01006B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287231 ID=CX287231; Name=CX287231; organism=Citrus clementina; type=EST; length=452bp
AATGGCAGCCTCAGTGATGGCTTCTTCGTTGAGCCTGAAACCAGCTCCTT
TCACTGTGGAGAAATCAGCAGCGAGAGGCCTTCCCTCTCTTGCTAAAACT
TCATTCAAAATTGTGGCTAAAGGCGGCAAGATCAAAACCGACAAACCCTA
TGGAGTAAATGGCGGTATGGATTTGAGGGAAGGTCTGGATGCATCCGGCA
GGAAGGCTAAAGGGAAAGGTGTTTACCAATTTGTTGACAAGTACGGTGCC
AATGTTGATGGATACAGTCCTATCTACAATGAGAACGACTGGTCTCCCAG
TGGAGATGTCTATACTGGTGGTGCAACTGGCTTGGCAATCTGAGCTGTTA
CTCTTGCCGGACTTCTTGCAGGAGGAGCACTTCTCGTCTACAACACAAGT
GCTTTGGCACAGTAGATGAATTTCAATCAATGTTACATTATTATCTCTAT
TT
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