CX287248

Overview
NameCX287248
Unique NameCX287248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length274
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1034 contig Ccv1_Contig1034:1..274. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287248 vs. ExPASy Swiss-Prot
Match: LSM8_PONAB (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii GN=LSM8 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.535e-14
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VYSTKEGVQQLVLGLYIIRGDNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 157
            V+S+ +GV+Q+VLGLYI+RGDN++++GE+DEE DS LDL N+RA PL  V H
Sbjct:   45 VFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96          
BLAST of CX287248 vs. ExPASy Swiss-Prot
Match: LSM8_MOUSE (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus GN=Lsm8 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.535e-14
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VYSTKEGVQQLVLGLYIIRGDNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 157
            V+S+ +GV+Q+VLGLYI+RGDN++++GE+DEE DS LDL N+RA PL  V H
Sbjct:   45 VFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96          
BLAST of CX287248 vs. ExPASy Swiss-Prot
Match: LSM8_HUMAN (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens GN=LSM8 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.535e-14
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VYSTKEGVQQLVLGLYIIRGDNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 157
            V+S+ +GV+Q+VLGLYI+RGDN++++GE+DEE DS LDL N+RA PL  V H
Sbjct:   45 VFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96          
BLAST of CX287248 vs. ExPASy Swiss-Prot
Match: LSM8_BOVIN (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus GN=LSM8 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.535e-14
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VYSTKEGVQQLVLGLYIIRGDNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 157
            V+S+ +GV+Q+VLGLYI+RGDN++++GE+DEE DS LDL N+RA PL  V H
Sbjct:   45 VFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96          
The following BLAST results are available for this feature:
BLAST of CX287248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LSM8_PONAB5.535e-1461.54U6 snRNA-associated Sm-like protein LSm8 OS=Pongo ... [more]
LSM8_MOUSE5.535e-1461.54U6 snRNA-associated Sm-like protein LSm8 OS=Mus mu... [more]
LSM8_HUMAN5.535e-1461.54U6 snRNA-associated Sm-like protein LSm8 OS=Homo s... [more]
LSM8_BOVIN5.535e-1461.54U6 snRNA-associated Sm-like protein LSm8 OS=Bos ta... [more]
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Properties
Property NameValue
Genbank descriptionC01006D09SK Veg1 Citrus clementina cDNA clone C01006D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287248 ID=CX287248; Name=CX287248; organism=Citrus clementina; type=EST; length=274bp
TGTTTACTCGACTAAGGAAGGTGTTCAGCAACTTGTGTTGGGATTGTACA
TAATAAGGGGTGACAACATAAGCATCGTTGGGGAAGTTGATGAAGAGCTG
GATTCTCATCTTGACTTGTCCAATTTGAGAGCTCATCCCCTCAAACCAGT
GATCCATTAATGGACTGTTAAAAGATGTAGAGCTGTTGTGGACTCAATGA
AGGATTAGAACAAAAACTGATAAATTTTATGCATTAGATGTATTTATTAA
AAAAAAAAAAAAAAAACTCGAGGG
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