CX287251

Overview
NameCX287251
Unique NameCX287251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length371
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:444..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.457e-15
Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 142
            TD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISF+ AKPPGV
Sbjct:  135 TDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.197e-14
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDATQVL EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:  123 TDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.159e-14
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:   62 TDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.221e-13
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SF+A +PPG
Sbjct:  124 TDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDA QV KEV E +KEYPH+F+RIIGFDN RQVQCISF+A KP G
Sbjct:  135 TDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SF+A +PPG
Sbjct:  123 TDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.553e-13
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 136
            TD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   34 TDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.641e-13
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 136
            TD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:  133 TDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KPPG
Sbjct:  135 TDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 136
            TD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:  133 TDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of CX287251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RBS_LACSA8.457e-1573.91Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HORVU4.197e-1477.78Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT7.159e-1475.56Ribulose bisphosphate carboxylase small chain clon... [more]
RBS2_WHEAT1.221e-1373.33Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS_MUSAC1.595e-1375.56Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_WHEAT1.595e-1373.33Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS_SINAL3.553e-1375.00Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS1A_ARATH4.641e-1375.00Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS3_AMAHP1.034e-1271.11Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3B_ARATH1.034e-1275.00Ribulose bisphosphate carboxylase small chain 3B, ... [more]

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Properties
Property NameValue
Genbank descriptionC01006E02SK Veg1 Citrus clementina cDNA clone C01006E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287251 ID=CX287251; Name=CX287251; organism=Citrus clementina; type=EST; length=371bp
AGGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGG
AATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGTCAA
GTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGTCTAGGTTCC
CAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGT
GTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAA
TTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTCC
CCGACTTTGGCTTTTTTTTTTTATATATATTTTAATAATTGAATCCTTTG
TTTTCAAAGGGGGGGCCCGGT
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