CX287251
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.457e-15 Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = 2 Query: 5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 142 TD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISF+ AKPPGV Sbjct: 135 TDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.197e-14 Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 2 Query: 5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139 TDATQVL EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG Sbjct: 123 TDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.159e-14 Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 2 Query: 5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139 TDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG Sbjct: 62 TDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.221e-13 Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 2 Query: 5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139 TDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SF+A +PPG Sbjct: 124 TDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13 Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 2 Query: 5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139 TDA QV KEV E +KEYPH+F+RIIGFDN RQVQCISF+A KP G Sbjct: 135 TDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13 Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 2 Query: 5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139 TDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SF+A +PPG Sbjct: 123 TDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.553e-13 Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 2 Query: 5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 136 TD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP Sbjct: 34 TDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 4.641e-13 Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 2 Query: 5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 136 TD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP Sbjct: 133 TDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12 Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 2 Query: 5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139 TD QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KPPG Sbjct: 135 TDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12 Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 2 Query: 5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 136 TD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP Sbjct: 133 TDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176 The following BLAST results are available for this feature:
BLAST of CX287251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287251 ID=CX287251; Name=CX287251; organism=Citrus clementina; type=EST; length=371bpback to top |