CX287254

Overview
NameCX287254
Unique NameCX287254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 6.973e-72
Identity = 129/164 (78.66%), Postives = 145/164 (88.41%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            +VA+H LT+AIRPQINAFLEG  ELIP EL+SIFNDKELELLISGLP+ID DD++ANTEY+ Y+  SPVI+WFWEVV+ FSKED AR LQFVTGTSKVPLEGF ALQGISG Q+ QIHKAYGS + LPSAHTCFNQLDLPEY SK+ ++ERLLLAIHE NEGFG
Sbjct: 3493 LVADHILTSAIRPQINAFLEGLNELIPRELVSIFNDKELELLISGLPEIDFDDLKANTEYTSYTVGSPVIRWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGSPERLPSAHTCFNQLDLPEYQSKEQVQERLLLAIHEANEGFG 3656          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 268.855 bits (686), Expect = 9.107e-72
Identity = 130/164 (79.27%), Postives = 144/164 (87.80%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            +VA H LT AIRPQINAFLEGF ELIP EL+SIFNDKELELLISGLP+ID DD++ANTEY+ Y+A SPVI WFWEVV+ FSKED AR LQFVTGTSKVPLEGF ALQGISG Q+ QIHKAYG+ + LPSAHTCFNQLDLPEY SK+ L+ERLLLAIHE +EGFG
Sbjct: 3516 LVAGHILTNAIRPQINAFLEGFNELIPRELVSIFNDKELELLISGLPEIDFDDLKANTEYTSYTAGSPVIHWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGAPERLPSAHTCFNQLDLPEYQSKEQLQERLLLAIHEASEGFG 3679          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: TOM1_NEUCR (E3 ubiquitin-protein ligase TOM1-like OS=Neurospora crassa GN=B11B22.010 PE=3 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 4.107e-56
Identity = 101/164 (61.59%), Postives = 129/164 (78.66%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            ++ EH+L T+++ Q+ AFL GF E+IP ELI+IFN++ELELLISGLPDID+DD +ANTEY  YSA +P IQWFW  V+ F KE+ A+LLQFVTGTSKVPL GF  L+G++G  +F IH+ YGS D LPS+HTCFNQLDLPEY + + L  +LL AI  G++ FG
Sbjct: 3861 LIVEHKLITSVKDQMKAFLTGFHEIIPEELIAIFNEQELELLISGLPDIDIDDWKANTEYHNYSAGAPQIQWFWRAVRSFDKEELAKLLQFVTGTSKVPLNGFKELEGMNGVSRFNIHRDYGSKDRLPSSHTCFNQLDLPEYENYETLRSQLLKAITAGSDYFG 4024          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: PTR1_SCHPO (E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharomyces pombe GN=ptr1 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 2.662e-55
Identity = 93/163 (57.06%), Postives = 130/163 (79.75%), Query Frame = 1
Query:    4 VAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            + +++L  +++ Q+ + L+GF+++IP  LI IFN++ELELLISGLP+ID+DD + NTEY GY+ +SP +QWFW  V+ F +E++A+LLQF TGTSKVPL GF  L+G+SG Q+F IHK+YGS++ LP +HTCFNQLDLPEY + + L   LL AI+EG+EGFG
Sbjct: 3063 MVDYKLRESVKDQLKSLLDGFSDIIPSHLIQIFNEQELELLISGLPEIDIDDWKNNTEYHGYNVSSPQVQWFWRAVRSFDEEERAKLLQFATGTSKVPLNGFKELEGMSGFQRFNIHKSYGSLNRLPQSHTCFNQLDLPEYDTYEQLRSMLLTAINEGSEGFG 3225          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HUWE1_RAT (E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus GN=Huwe1 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 1.461e-53
Identity = 102/164 (62.20%), Postives = 127/164 (77.44%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            +V + R+T AIR Q+ AFLEGF E+IP  LISIF ++ELELLISGLP ID+DD+++NTEY  Y + S  IQWFW  ++ F + D+A+ LQFVTGTSKVPL+GF+AL+G++G QKFQIH+   S D LPSAHTCFNQLDLP Y S + L   LLLAI E +EGFG
Sbjct:  157 LVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 320          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HUWE1_MOUSE (E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=4)

HSP 1 Score: 208.379 bits (529), Expect = 1.461e-53
Identity = 102/164 (62.20%), Postives = 127/164 (77.44%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            +V + R+T AIR Q+ AFLEGF E+IP  LISIF ++ELELLISGLP ID+DD+++NTEY  Y + S  IQWFW  ++ F + D+A+ LQFVTGTSKVPL+GF+AL+G++G QKFQIH+   S D LPSAHTCFNQLDLP Y S + L   LLLAI E +EGFG
Sbjct: 4212 LVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 4375          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HUWE1_HUMAN (E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3)

HSP 1 Score: 208.379 bits (529), Expect = 1.461e-53
Identity = 102/164 (62.20%), Postives = 127/164 (77.44%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            +V + R+T AIR Q+ AFLEGF E+IP  LISIF ++ELELLISGLP ID+DD+++NTEY  Y + S  IQWFW  ++ F + D+A+ LQFVTGTSKVPL+GF+AL+G++G QKFQIH+   S D LPSAHTCFNQLDLP Y S + L   LLLAI E +EGFG
Sbjct: 4209 LVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 4372          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: TOM1_ASHGO (Probable E3 ubiquitin-protein ligase TOM1 OS=Ashbya gossypii GN=TOM1 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 6.137e-52
Identity = 95/163 (58.28%), Postives = 124/163 (76.07%), Query Frame = 1
Query:    4 VAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            + E++L T+++ Q+  FL+GF  +IP +LISIF+++ELELL+SGLPDID+DD + NT Y  Y+     I +FW  V+ F KE++A+LLQFVTGTSKVPL GF  L G++G  KF IH+ YGSID LPS+HTCFNQLDLP Y S + L   LLLAI+EG+EGFG
Sbjct: 3094 IVEYKLQTSVKDQMENFLQGFYAIIPKDLISIFDEQELELLVSGLPDIDVDDWKNNTIYVNYTPTCKQINYFWRAVRSFDKEERAKLLQFVTGTSKVPLNGFKELSGVNGISKFSIHRDYGSIDRLPSSHTCFNQLDLPAYDSYETLRGSLLLAINEGHEGFG 3256          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: TOM1_YEAST (E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces cerevisiae GN=TOM1 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 3.152e-48
Identity = 91/163 (55.83%), Postives = 122/163 (74.85%), Query Frame = 1
Query:    4 VAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            V E++L T+++ Q++ FL GF  LI  +LI+IF+++ELELLISGLPDID+DD + NT Y  Y+A    + +FW  V+ F  E++A+LLQFVTGTSKVPL GF  L G++G  KF IH+ +GS + LPS+HTCFNQL+LP Y S + L   LLLAI+EG+EGFG
Sbjct: 3104 VVEYKLQTSVKEQMDNFLVGFYALISKDLITIFDEQELELLISGLPDIDVDDWKNNTTYVNYTATCKEVSYFWRAVRSFDAEERAKLLQFVTGTSKVPLNGFKELSGVNGVCKFSIHRDFGSSERLPSSHTCFNQLNLPPYESYETLRGSLLLAINEGHEGFG 3266          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: PUB3_SCHPO (E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe GN=pub3 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 2.950e-46
Identity = 85/164 (51.83%), Postives = 120/164 (73.17%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            +V E R++  +  Q NAF  GF EL+  +L+++F+++ELELLI G+ D+D++D +++TEY  Y A  PVI+WFWE++ G+  ED+++LLQF TGTS++P+ GF  LQG  G +KF I KA G+ D LP AHTCFN+LDLP+YPSK  L E+L LA+ E   GFG
Sbjct:  623 LVTEWRVSKRVEQQFNAFYSGFVELVSPDLVNVFDERELELLIGGISDVDVEDWKSHTEYRTYIATDPVIKWFWEIIAGWKNEDRSKLLQFATGTSRIPVNGFRDLQGSDGPRKFTIEKA-GTPDQLPVAHTCFNRLDLPDYPSKDTLHEKLSLAV-ENTVGFG 784          
The following BLAST results are available for this feature:
BLAST of CX287254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
UPL2_ARATH6.973e-7278.66E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
UPL1_ARATH9.107e-7279.27E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
TOM1_NEUCR4.107e-5661.59E3 ubiquitin-protein ligase TOM1-like OS=Neurospor... [more]
PTR1_SCHPO2.662e-5557.06E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharo... [more]
HUWE1_RAT1.461e-5362.20E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Ra... [more]
HUWE1_MOUSE1.461e-5362.20E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus ... [more]
HUWE1_HUMAN1.461e-5362.20E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens ... [more]
TOM1_ASHGO6.137e-5258.28Probable E3 ubiquitin-protein ligase TOM1 OS=Ashby... [more]
TOM1_YEAST3.152e-4855.83E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces ... [more]
PUB3_SCHPO2.950e-4651.83E3 ubiquitin-protein ligase pub3 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionC01006E05SK Veg1 Citrus clementina cDNA clone C01006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287254 ID=CX287254; Name=CX287254; organism=Citrus clementina; type=EST; length=493bp
GTAGTTGCGGAGCATCGTTTGACGACTGCTATTCGGCCTCAAATAAATGC
TTTTCTGGAGGGATTTACCGAACTAATTCCTGGGGAGTTGATATCTATCT
TCAATGACAAGGAATTAGAATTATTGATTAGTGGGCTTCCGGATATTGAT
TTGGATGACATGAGGGCAAATACGGAATATTCTGGATATAGTGCTGCATC
TCCTGTTATCCAGTGGTTTTGGGAGGTTGTTCAAGGGTTCAGCAAGGAGG
ATAAGGCTCGTCTTCTGCAGTTTGTGACTGGCACCTCAAAGGTGCCCTTG
GAAGGTTTCAGTGCACTTCAAGGAATTTCAGGTTCACAGAAGTTTCAAAT
ACACAAGGCATATGGCAGCATAGATCATTTGCCTTCTGCTCATACTTGTT
TCAATCAATTAGATTTGCCGGAATATCCTTCTAAGCAGCATCTAGAGGAG
AGACTGCTGCTTGCAATTCATGAAGGCAATGAAGGGTTTGGAT
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