CX287256

Overview
NameCX287256
Unique NameCX287256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig30 contig Ccv1_Contig30:920..1288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP1_ARATH (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.066e-33
Identity = 71/87 (81.61%), Postives = 77/87 (88.51%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 268
            EGGFD +AVATANILE+S +     PYY+LSVLTRTADGDEGGKHQLITATV GGKLYICKAQAGDKRWFKG RK+VES A+SFSVA
Sbjct:  177 EGGFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 263          
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP_CUCSA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.819e-33
Identity = 71/87 (81.61%), Postives = 74/87 (85.06%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 268
            EGGFDPDAVATANILEA+        YYF+SVLTRTADGDEGGKHQLITATV  GKLYICKAQAGDKRWFKG RK+VE  ASSFSVA
Sbjct:  177 EGGFDPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGARKFVEGAASSFSVA 263          
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 9.028e-33
Identity = 68/87 (78.16%), Postives = 75/87 (86.21%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 268
            EGGFD +AVATANILE +++     PYY+LSVLTRTADGDEGGKHQLITATV GGKLYICKAQAGDKRWFKG  K+VE  A+SFSVA
Sbjct:  174 EGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 260          
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP2_ARATH (Putative oxygen-evolving enhancer protein 2-2 OS=Arabidopsis thaliana GN=PSBP2 PE=5 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.179e-32
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 268
            EGGFD +AVATANILE S +      YY+LSVLTRTADGDEGGKHQLITATV GGKLYICKAQAGDKRWFKG RK+VE+ A+SFSVA
Sbjct:   39 EGGFDANAVATANILETSTQEIGGKEYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 125          
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.643e-32
Identity = 67/87 (77.01%), Postives = 74/87 (85.06%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 268
            EGGFD +AVATANILE +++     PYY+LSVLTRTAD DEGGKHQLITATV GGKLYICKAQAGDKRWFKG  K+VE  A+SFSVA
Sbjct:  131 EGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADEDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 217          
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP_PEA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum GN=PSBP PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.703e-31
Identity = 69/87 (79.31%), Postives = 73/87 (83.91%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 268
            EGGFD +AVA ANILE+S        YY +SVLTRTADGDEGGKHQLITATVK GKLYICKAQAGDKRWFKG RK+VE TASSFSVA
Sbjct:  173 EGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLYICKAQAGDKRWFKGARKFVEDTASSFSVA 259          
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP2_TOBAC (Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 6.470e-31
Identity = 65/87 (74.71%), Postives = 74/87 (85.06%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 268
            EGGF+ DAVA AN+LE S       PYY+LSVLTRTADG+EGGKHQLITATV  GKLYICKAQAGDKRWFKG +K+VE+TA+SFS+A
Sbjct:  179 EGGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265          
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP_SOLTU (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.882e-30
Identity = 65/87 (74.71%), Postives = 73/87 (83.91%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 268
            EGGF+  AVATAN+LEAS        YY+LSVLTRTADGDEGGKHQLITATV  GKLYICKAQAGDKRWFKG +K+VE+ A+SFS+A
Sbjct:  174 EGGFESGAVATANLLEASSATVGGKQYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 260          
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP1_TOBAC (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.882e-30
Identity = 66/87 (75.86%), Postives = 72/87 (82.76%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 268
            EGGF+  AVATAN+LE S        YY LSVLTRTADGDEGGKHQLI+ATV GGKLYICKAQAGDKRWFKG RK+VE+ A+SFSVA
Sbjct:  182 EGGFESGAVATANLLETSSSTVGGKEYYILSVLTRTADGDEGGKHQLISATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 268          
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP_FRIAG (Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.477e-30
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 268
            EGGFDPD+VATANILE S        YY +SVLTRTADGDEGGKH +I+ATV  GKLYICKAQAGDKRWFKG +K+VEST +SF+VA
Sbjct:  178 EGGFDPDSVATANILEVSTPVVGGKQYYNISVLTRTADGDEGGKHHVISATVTDGKLYICKAQAGDKRWFKGAKKFVESTTTSFNVA 264          
The following BLAST results are available for this feature:
BLAST of CX287256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP1_ARATH1.066e-3381.61Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP_CUCSA1.819e-3381.61Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SINAL9.028e-3378.16Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_ARATH1.179e-3279.31Putative oxygen-evolving enhancer protein 2-2 OS=A... [more]
PSBP_BRAJU7.643e-3277.01Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_PEA1.703e-3179.31Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_TOBAC6.470e-3174.71Oxygen-evolving enhancer protein 2-2, chloroplasti... [more]
PSBP_SOLTU1.882e-3074.71Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP1_TOBAC1.882e-3075.86Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP_FRIAG5.477e-3073.56Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01006E07SK Veg1 Citrus clementina cDNA clone C01006E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287256 ID=CX287256; Name=CX287256; organism=Citrus clementina; type=EST; length=369bp
CTCGTGCCGAATTCGGCACGAGGGTGGTTTCGACCCTGATGCTGTGGCAA
CAGCTAACATCTTGGAGGCTTCAGTCCGACCACCATACTACTTCTTGTCT
GTATTAACAAGAACTGCTGATGGAGATGAAGGTGGCAAGCATCAACTAAT
TACAGCCACGGTTAAAGGTGGCAAGCTTTACATCTGCAAGGCGCAAGCTG
GAGACAAGAGGTGGTTTAAGGGAACAAGAAAGTATGTGGAAAGCACTGCC
AGTTCTTTCAGTGTTGCTTGAGACATTAATCAGAATTTTTATGTAAATCC
AACTTAATGTATGCTGTTTGTTTTGAATTATCTACTCCCATCTTTCCCCA
AAAAAAAAAAAAAAAAAAA
back to top