CX287270

Overview
NameCX287270
Unique NameCX287270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length571
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2430 contig Ccv1_Contig2430:22..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX287270 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.926e-27
Identity = 59/96 (61.46%), Postives = 68/96 (70.83%), Query Frame = 3 
Query:  282 TKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEV 569
            T   ++P EMKAW+Y +YGGVDVLK +  + VP++KEDQVLIKVVAAALNPVD KRRQGKFKATDSPLPT                 K+ KEGDEV
Sbjct:   69 TADASIPKEMKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEV 164
The following BLAST results are available for this feature:
BLAST of CX287270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QORL_ARATH1.926e-2761.46Quinone oxidoreductase-like protein At1g23740, chl... [more]
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Properties
Property NameValue
Genbank descriptionC01006F09SK Veg1 Citrus clementina cDNA clone C01006F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287270 ID=CX287270; Name=CX287270; organism=Citrus clementina; type=EST; length=571bp
ATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGCTACAACGTACGG
TTGCAACAAATGGAGACCATACTTACTACTACTGCTTCTAAACTCACAAT
CTTTCATTCTATCTCCTCCACCAAATTAAATTCATTTTCTCGAAAATTTT
CCGTCGGTTTCTCGGGAAACAAAAACAGGAAAAAAGTAACCACCCTTAAG
CAAGGCTCATTTTCTTACCTTCCTCTTGGAGTTCAAGCAAGTGCATCACA
AGCTGCAGCATCGTCCACTGAGGCTGAGCCCACTAAAGTGGGAACTGTTC
CAAGCGAAATGAAGGCTTGGCTGTATGGGGAATATGGGGGCGTTGATGTT
TTGAAGTTCGACGAGAAAGTGACAGTGCCTCAAGTGAAGGAGGATCAAGT
GTTGATCAAAGTTGTCGCTGCTGCCCTTAATCCTGTTGATGGGAAGAGAA
GGCAGGGCAAGTTCAAGGCCACTGATTCTCCTCTCCCGACTGTTCCAGGC
TATGATGTTGCTGGTGTAGTGGTAAAGGTTGGCACTCAAGTGAAGGAATT
TAAGGAGGGGGATGAAGTATA
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