CX287271

Overview
NameCX287271
Unique NameCX287271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig43 contig Ccv1_Contig43:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287271 vs. ExPASy Swiss-Prot
Match: TAF13_PONAB (Transcription initiation factor TFIID subunit 13 OS=Pongo abelii GN=TAF13 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.687e-23
Identity = 54/102 (52.94%), Postives = 77/102 (75.49%), Query Frame = -3
Query:  262 GTRETTSFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDIGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE 567
            G  E    KRKR +F K+L+ MMYGFGDD NP  E+V ++ED+V+E+++++ HKA  IG ++G++ VED ++LIRKDP K  R  +LL+M EELK+ARKAF+
Sbjct:   19 GGAEGGQGKRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118          
BLAST of CX287271 vs. ExPASy Swiss-Prot
Match: TAF13_MOUSE (Transcription initiation factor TFIID subunit 13 OS=Mus musculus GN=Taf13 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.687e-23
Identity = 54/102 (52.94%), Postives = 77/102 (75.49%), Query Frame = -3
Query:  262 GTRETTSFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDIGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE 567
            G  E    KRKR +F K+L+ MMYGFGDD NP  E+V ++ED+V+E+++++ HKA  IG ++G++ VED ++LIRKDP K  R  +LL+M EELK+ARKAF+
Sbjct:   19 GGAEGGQGKRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118          
BLAST of CX287271 vs. ExPASy Swiss-Prot
Match: TAF13_HUMAN (Transcription initiation factor TFIID subunit 13 OS=Homo sapiens GN=TAF13 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.687e-23
Identity = 54/102 (52.94%), Postives = 77/102 (75.49%), Query Frame = -3
Query:  262 GTRETTSFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDIGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE 567
            G  E    KRKR +F K+L+ MMYGFGDD NP  E+V ++ED+V+E+++++ HKA  IG ++G++ VED ++LIRKDP K  R  +LL+M EELK+ARKAF+
Sbjct:   19 GGAEGGQGKRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118          
BLAST of CX287271 vs. ExPASy Swiss-Prot
Match: TAF13_BOVIN (Transcription initiation factor TFIID subunit 13 OS=Bos taurus GN=TAF13 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.687e-23
Identity = 54/102 (52.94%), Postives = 77/102 (75.49%), Query Frame = -3
Query:  262 GTRETTSFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDIGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE 567
            G  E    KRKR +F K+L+ MMYGFGDD NP  E+V ++ED+V+E+++++ HKA  IG ++G++ VED ++LIRKDP K  R  +LL+M EELK+ARKAF+
Sbjct:   19 GGAEGGQGKRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118          
BLAST of CX287271 vs. ExPASy Swiss-Prot
Match: TAF13_DICDI (Transcription initiation factor TFIID subunit 13 OS=Dictyostelium discoideum GN=taf13 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.865e-22
Identity = 53/104 (50.96%), Postives = 75/104 (72.12%), Query Frame = -3
Query:  247 SFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDIGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE---VDEEK 549
            S KRKR +F K+L+HMMYGFGD   PL E++ L+E++V E++ ++  KA  + +KRGK   ED ++L+RKDP K  R  ELL M EELK+A+KAF+   V+EE+
Sbjct:    2 STKRKR-MFSKELKHMMYGFGDVREPLHESIDLLEELVFEFIQEMTLKAAQVSNKRGKFQTEDLVFLVRKDPKKYYRVIELLRMNEELKKAKKAFDETNVEEEE 104          
BLAST of CX287271 vs. ExPASy Swiss-Prot
Match: TAF13_SCHPO (Transcription initiation factor TFIID subunit 13 OS=Schizosaccharomyces pombe GN=taf13 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.171e-16
Identity = 37/97 (38.14%), Postives = 65/97 (67.01%), Query Frame = -3
Query:  250 RKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDIGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFEVDEE 540
            R++ +F KDL+ +MY FGDD NP P+++ ++E+IVV+Y++++  +A  I   R K+ V+DF + +R DP KL R  ELL +Q+ +   R   + +++
Sbjct:   13 RRQHLFTKDLKSLMYAFGDDVNPAPDSINVLEEIVVDYINEMCLEAARIAGNRNKVKVDDFKFALRDDPKKLGRVEELLVLQKMIADTRNVMKYNKD 109          
BLAST of CX287271 vs. ExPASy Swiss-Prot
Match: TAF13_YEAST (Transcription initiation factor TFIID subunit 13 OS=Saccharomyces cerevisiae GN=TAF13 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  250 RKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLA----HKAQDIGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAF-EVDEE 540
            +K  +F KD+  ++Y +GD P PL  TV  ++++V  Y+ D+     H AQ+  S+R KL +EDF + +RKDP KL R  EL++  + + +A+K F E D +
Sbjct:    6 KKTNLFNKDVSSLLYAYGDVPQPLQATVQCLDELVSGYLVDVCTNAFHTAQN--SQRNKLRLEDFKFALRKDPIKLGRAEELIATNKLITEAKKQFNETDNQ 105          
The following BLAST results are available for this feature:
BLAST of CX287271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TAF13_PONAB1.687e-2352.94Transcription initiation factor TFIID subunit 13 O... [more]
TAF13_MOUSE1.687e-2352.94Transcription initiation factor TFIID subunit 13 O... [more]
TAF13_HUMAN1.687e-2352.94Transcription initiation factor TFIID subunit 13 O... [more]
TAF13_BOVIN1.687e-2352.94Transcription initiation factor TFIID subunit 13 O... [more]
TAF13_DICDI1.865e-2250.96Transcription initiation factor TFIID subunit 13 O... [more]
TAF13_SCHPO1.171e-1638.14Transcription initiation factor TFIID subunit 13 O... [more]
TAF13_YEAST1.026e-1238.24Transcription initiation factor TFIID subunit 13 O... [more]
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Properties
Property NameValue
Genbank descriptionC01006F10SK Veg1 Citrus clementina cDNA clone C01006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287271 ID=CX287271; Name=CX287271; organism=Citrus clementina; type=EST; length=650bp
GAATTCGGCACGAGGTTTTTGTTTGCAGCACGACCGTGGCGCTGCTTTAA
AATATTTGTTAAATCTCAGCATACCATGCGAGCATCAAATCGACAAATAG
TGCATTTACAAACTTTTACCAGTTCAACTCCACCGTTAAAACATAACCCA
CCTTAAAATGAAAATAACCTGGGTTGCACCACTAATGCTAGCTTAAAAAC
ATTTGTTCAGAAGTTTAGATCCTGGTAATCACTCTATAGACGCCAGCTTC
TCTTCGTCTACCTCAAAAGCTTTTCTTGCTTGCTTCAGCTCCTCTTGCAT
GGACAATAATTCTGTACAGCGGTTAAGTTTCGGTGGGTCCTTTCGAATTA
GATAAAGAAAATCTTCAACAGATAACTTTCCTCTCTTTGAACCAATATCT
TGCGCTTTGTGTGCCAAATCTGAGACATACTCCACAACTATGTCCTCCAC
AAGCGCTACAGTTTCTGGAAGTGGATTAGGATCATCGCCAAAACCATACA
TCATGTGCTGAAGATCTTTTTGAAAGACTCCTCGCTTGCGCTTAAATGAA
GTTGTTTCCCTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGTGTGAACC
TTTGGTCCATGGGTAGGGACCCCAAAATTTGGAAGAACCCATTGGAATTT
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