CX287272
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 9.546e-51 Identity = 98/129 (75.97%), Postives = 113/129 (87.60%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKTE 460 LEP YP RMAGRILGMGDVLSFVEKA EVM EDAE+L KKIMSA FDFNDFLKQTR VA+MGSM+R +G IPGMGK++PAQ+REAE +L +MEA+IE +TPEERE+P LLAESP R KR+A++SGKTE Sbjct: 357 LEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEERERPELLAESPERRKRIAKDSGKTE 485
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_SYNE7 (Signal sequence-binding protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 7.112e-30 Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGM-GKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKTE 460 L+P +P RMA RILGMGDVL+ VEKA E + D E++ +KI++A FDF DFLKQ R + MGS++ I IPG+ GKI Q+R+ E LK +EA+I ++TP+ER P LL+ SP R R+A+ G+TE Sbjct: 281 LQPFHPERMASRILGMGDVLTLVEKAQEEIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKINDEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTE 410
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.584e-29 Identity = 64/129 (49.61%), Postives = 87/129 (67.44%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKTE 460 L+P YP R+A RIL MGDVL+ VEKA E + D E+L KI+ A FDF+DF+KQ R + MGS+ + IPGM K++ + + E LK EA+I ++T EER+ P LLA+SP R +R+AQ SG +E Sbjct: 281 LQPFYPDRLASRILNMGDVLTLVEKAQEAIDVGDVEKLQNKILEATFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSSGDIEKGEKELKRTEAMISSMTTEERKNPDLLAKSPSRRRRIAQGSGHSE 409
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_STRMU (Signal recognition particle protein OS=Streptococcus mutans GN=ffh PE=3 SV=3) HSP 1 Score: 97.8265 bits (242), Expect = 2.293e-20 Identity = 54/129 (41.86%), Postives = 78/129 (60.47%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITP-AQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457 +E +P RM+ RILGMGD+L+ +EKA + + + EL +K+ +FDFNDF++Q V MGSM + IPGM A V+ E + A++ ++TPEERE P LL +P R +R+A SG T Sbjct: 283 IETFHPDRMSSRILGMGDLLTLIEKASQDYDEQKSAELAEKMRENSFDFNDFIEQLDQVQNMGSMEDILKMIPGMANNPALANVKVDEGEIARKRAIVSSMTPEERENPDLL--TPSRRRRIASGSGNT 409
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_RICCN (Signal recognition particle protein OS=Rickettsia conorii GN=ffh PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.941e-19 Identity = 50/124 (40.32%), Postives = 80/124 (64.52%), Query Frame = 2 Query: 95 RMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIM---EALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457 R+A RIL MGD++SFVEKA ++ E+AE+ K+ FD ND+L+Q R++ +MG + +PG GKI Q+ +++ + KI+ EA+I ++TP+ER+ P ++ S R KR+A +G T Sbjct: 290 RLASRILDMGDIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKERKNPDIINAS--RRKRIAVGAGTT 410
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_AQUAE (Signal recognition particle protein OS=Aquifex aeolicus GN=ffh PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.941e-19 Identity = 50/128 (39.06%), Postives = 77/128 (60.16%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457 +EP YP R+A RILG+GD+ S VEKA EV+ + A+ + K+M+ FD D + R + +MG + + + IPG+ ++ E K +EA+I ++TPEER P ++ S R KR+A+ SG T Sbjct: 276 IEPFYPDRIAQRILGLGDIQSLVEKAQEVITEDKAQVMATKVMTGEFDLEDLREMLRMIQQMGPLDKLLSMIPGVAP-QLKHLKVDEKQFKKIEAIINSMTPEERRNPKIINMS--RKKRIARGSGTT 400
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_RICFE (Signal recognition particle protein OS=Rickettsia felis GN=ffh PE=3 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 7.377e-19 Identity = 50/124 (40.32%), Postives = 79/124 (63.71%), Query Frame = 2 Query: 95 RMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREAETSLKIM---EALIEALTPEEREKPHLLAESPVRTKRVAQESGKT 457 R+A RIL MGD++SFVEKA ++ E+AE+ K+ FD ND+L+Q R++ +MG + +PG GKI Q+ +++ + KI+ EA+I ++T +ERE P ++ S R KR+A +G T Sbjct: 290 RLASRILDMGDIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTLKERENPDIINAS--RRKRIAAGAGTT 410
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_HELPJ (Signal recognition particle protein OS=Helicobacter pylori J99 GN=ffh PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 7.377e-19 Identity = 51/129 (39.53%), Postives = 80/129 (62.02%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSANFDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPA-QVREAETSLKI--MEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451 L+ P R+ GR++G GD++S EK V+ +A++L KK+ F FNDFL Q V ++GSMS I IPG+G + A + + E+SL++ ++A++ ++T +ERE P +L S R KR+A SG Sbjct: 274 LDVFMPERIVGRLMGAGDIISLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKERENPEILNGS--RRKRIALGSG 400
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_ECOLI (Signal recognition particle protein OS=Escherichia coli (strain K12) GN=ffh PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.258e-18 Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSAN-FDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREA--ETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451 LEP +P R+A RILGMGDVLS +E + AE+L K+ + FD NDFL+Q R + MG M+ +G +PGMG+I P V+ + L MEA+I ++T +ER KP ++ S R +R+A G Sbjct: 282 LEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCG 407
BLAST of CX287272 vs. ExPASy Swiss-Prot
Match: SRP54_ECOL6 (Signal recognition particle protein OS=Escherichia coli O6 GN=ffh PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.258e-18 Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 2 Query: 74 LEPCYPYRMAGRILGMGDVLSFVEKAHEVMPHEDAEELLKKIMSAN-FDFNDFLKQTRTVARMGSMSRAIGTIPGMGKITPAQVREA--ETSLKIMEALIEALTPEEREKPHLLAESPVRTKRVAQESG 451 LEP +P R+A RILGMGDVLS +E + AE+L K+ + FD NDFL+Q R + MG M+ +G +PGMG+I P V+ + L MEA+I ++T +ER KP ++ S R +R+A G Sbjct: 282 LEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCG 407 The following BLAST results are available for this feature:
BLAST of CX287272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287272 ID=CX287272; Name=CX287272; organism=Citrus clementina; type=EST; length=462bpback to top |