CX287284
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ANASP (Carbamoyl-phosphate synthase large chain OS=Anabaena sp. (strain PCC 7120) GN=carB PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 1.728e-46 Identity = 67/101 (66.34%), Postives = 80/101 (79.21%), Query Frame = 2 Query: 5 LNVCGLMNCQYAI----TTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L+V GLMN Q+A+ + S Y+LEANPRASRTVPFVSKA G PLAK A+L+MSGK+L +L FT+EVIP H++VKEAVLPF KF G D +LGPEM STG Sbjct: 845 LSVVGLMNIQFAVIGASSYSPQVYILEANPRASRTVPFVSKATGVPLAKLASLIMSGKTLEELNFTQEVIPSHIAVKEAVLPFNKFPGTDTILGPEMRSTG 945 HSP 2 Score: 75.8702 bits (185), Expect = 1.728e-46 Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID F AFAKA++ AG++LPL+GTVF+S++D K + F+D+GF +++T GT + G+ VE VLK+ Sbjct: 946 EVMGIDSDFGRAFAKAELGAGERLPLTGTVFVSMSDRDKSAAVPVVREFIDLGFKVMATFGTRRVLLENGLNVELVLKL 1024
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_SYNY3 (Carbamoyl-phosphate synthase large chain OS=Synechocystis sp. (strain PCC 6803) GN=carB PE=3 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 5.405e-45 Identity = 71/98 (72.45%), Postives = 80/98 (81.63%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGD-AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LNV GLMN QYA+ GD Y+LEANPRASRTVP+VSKA G PLAK A+LVMSGK+L +LG T+E IP+HV+VKEAVLPF KF G D LLGPEM STG Sbjct: 828 LNVVGLMNIQYAV--QGDQVYILEANPRASRTVPYVSKATGRPLAKIASLVMSGKTLEELGVTEEFIPQHVAVKEAVLPFSKFPGADTLLGPEMRSTG 923 HSP 2 Score: 67.781 bits (164), Expect = 5.405e-45 Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGI-AVERVLKM 531 EVMGID F AFAKA++ AG L +GTVF+S++D TK + +D+GF +V+TSGT + GI VE VLK+ Sbjct: 924 EVMGIDSDFGKAFAKAELGAGVILATTGTVFVSMSDRTKEAAVPVVRELIDLGFKVVATSGTQKVLREHGIEGVEVVLKL 1003
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_RHOBA (Carbamoyl-phosphate synthase large chain OS=Rhodopirellula baltica GN=carB PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 3.737e-43 Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 2 Query: 2 RLNVCGLMNCQYAITTSGDA---YLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 RLNV GLMN Q+A+ G Y+LE NPRASRTVPFV+KA G P+A A VM+GK+L +L T+E IP+HVS+KE+VLPF KF G D++LGPEM STG Sbjct: 823 RLNVVGLMNIQFAVKMEGTQPTLYILEVNPRASRTVPFVAKATGVPVANLATKVMAGKTLKELNVTEEPIPRHVSIKESVLPFRKFAGVDIVLGPEMRSTG 923 HSP 2 Score: 73.1738 bits (178), Expect = 3.737e-43 Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ F IAFAK+Q+AAG LP SG +FLSL+ K E + ++ +++GF +++T GTA +E GIAV RV K+ Sbjct: 924 EVMGVSELFSIAFAKSQLAAGTVLPESGKIFLSLSANHKEAAESLGKSLIELGFELLATEGTAVRLEANGIAVTRVKKL 1002
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_PSESM (Carbamoyl-phosphate synthase large chain OS=Pseudomonas syringae pv. tomato GN=carB PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.581e-41 Identity = 62/97 (63.92%), Postives = 70/97 (72.16%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GLMN Q A+ D Y++E NPRASRTVPFVSK IG LA AA VM+GK+L +L FTKE+IP SVKEAV PF KF G D +LGPEM STG Sbjct: 819 LGVVGLMNVQLALQGE-DIYVIEVNPRASRTVPFVSKCIGVSLAMIAARVMAGKTLKELNFTKEIIPNFYSVKEAVFPFAKFPGVDPILGPEMKSTG 914 HSP 2 Score: 74.7146 bits (182), Expect = 2.581e-41 Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ +F AFAKAQ+ A + LP GT F+S+ D KP +E +A +++GF IV+T+GTA +E G+ V RV K+ Sbjct: 915 EVMGVGDTFGEAFAKAQMGASEVLPTGGTAFISVRDDDKPLVEAVARDLINLGFEIVATAGTAKLIEAAGLKVRRVNKV 993
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_PSEPK (Carbamoyl-phosphate synthase large chain OS=Pseudomonas putida (strain KT2440) GN=carB PE=3 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 1.645e-40 Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDA-YLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GLMN Q A+ GD Y++E NPRASRTVPFVSK IG LA AA VM+GK+L +LGFT+E+IP SVKEAV PF KF G D +LGPEM STG Sbjct: 819 LGVVGLMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKELGFTQEIIPNFYSVKEAVFPFAKFPGVDPILGPEMKSTG 914 HSP 2 Score: 72.4034 bits (176), Expect = 1.645e-40 Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ SF AFAKAQ+ A + LP GT F+S+ D KP + +A + +GF +V+T+GTA +E G+ V RV K+ Sbjct: 915 EVMGVGDSFGEAFAKAQMGASEVLPTGGTAFISVRDDDKPQVAGVARDLIALGFEVVATAGTAKVIEAAGLKVRRVNKV 993
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_GEMAT (Carbamoyl-phosphate synthase large chain OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=carB PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 2.143e-40 Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 2 Query: 2 RLNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 RL V GL+N QYA G Y++E NPRASRT PFVSKAIG L AA +M G++L ++GFT+E+IP ++SVKEAV PF KF+ +D +LGPEM STG Sbjct: 819 RLGVVGLINVQYAYK-DGQVYVIEVNPRASRTAPFVSKAIGVSLPSVAARLMLGETLAEVGFTQEIIPPYISVKEAVFPFNKFREFDPVLGPEMRSTG 915 HSP 2 Score: 73.1738 bits (178), Expect = 2.143e-40 Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID F AF K+Q+AA LP GTVF +++D KP +A F IGF+I++TSGTA F +GI V VLK+ Sbjct: 916 EVMGIDDDFGAAFMKSQLAADNALPREGTVFFTVSDGDKPTAASLAGKFHSIGFSIMATSGTAAFFREQGIPVTSVLKV 994
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_XANAC (Carbamoyl-phosphate synthase large chain OS=Xanthomonas axonopodis pv. citri GN=carB PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 2.143e-40 Identity = 66/101 (65.35%), Postives = 77/101 (76.24%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTS--GD--AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LNV GLMN Q+A+ + GD YLLE NPRASRTVPFVSKAIG PLAK AA M+GK+L + G TKE++P + SVKEA+ PF KFQG D +LGPEM STG Sbjct: 821 LNVVGLMNTQFAVQVNEAGDDIVYLLEVNPRASRTVPFVSKAIGMPLAKIAARCMAGKTLAEQGATKEIVPDYYSVKEAIFPFAKFQGVDPILGPEMRSTG 921 HSP 2 Score: 63.1586 bits (152), Expect = 2.143e-40 Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ SF AFA+AQ A G K P G F+S+ D K + +A+A ++ GFT+V+T GT +++ G++ E V K+ Sbjct: 922 EVMGVGRSFSAAFARAQEAGGIKAPPLGKAFVSVRDPDKQRVLPVAQALVERGFTLVATRGTGAWLQQNGLSCEIVNKV 1000
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ARCFU (Carbamoyl-phosphate synthase large chain OS=Archaeoglobus fulgidus GN=carB PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.740e-40 Identity = 62/97 (63.92%), Postives = 72/97 (74.23%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LNV GL+N QYA+ G Y+LEANPRASRTVPFVSKA G PLAK AA +M GK L +LG +++ KHV+VKEAV PF K G D +LGPEM STG Sbjct: 821 LNVVGLINIQYAVK-DGKVYVLEANPRASRTVPFVSKATGIPLAKIAAKLMMGKKLRELGVKEKLKLKHVAVKEAVFPFIKLPGVDPVLGPEMKSTG 916 HSP 2 Score: 70.8626 bits (172), Expect = 4.740e-40 Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTK-PHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID F +A+ KA++AAG KLPL GTVF+S+ K L +A F ++GF I++T GT F+ GI + +LK+ Sbjct: 917 EVMGIDYDFGLAYYKAELAAGMKLPLKGTVFISVRRKDKNDRLLYLARKFKELGFRIIATDGTRDFLVQNGIEADLILKI 996
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_XANCP (Carbamoyl-phosphate synthase large chain OS=Xanthomonas campestris pv. campestris GN=carB PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.366e-39 Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTS--GD--AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LNV GLMN Q+A+ + GD YLLE NPRASRTVPFVSKA G PLAK AA M+GK+L + G TKE++P + SVKEA+ PF KFQG D +LGPEM STG Sbjct: 821 LNVVGLMNTQFAVQVNDAGDDIVYLLEVNPRASRTVPFVSKATGMPLAKIAARCMAGKTLAEQGATKEIVPDYYSVKEAIFPFAKFQGVDPILGPEMRSTG 921 HSP 2 Score: 62.3882 bits (150), Expect = 1.366e-39 Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ SF AFA+AQ A G K P G F+S+ D K + +A+A ++ GFT+V+T GT +++ G++ E V K+ Sbjct: 922 EVMGVGRSFGAAFARAQEAGGIKAPPLGKAFVSVRDPDKQRVLPVAQALVERGFTLVATRGTGAWLQQHGLSCEIVNKV 1000
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_PSEAE (Carbamoyl-phosphate synthase large chain OS=Pseudomonas aeruginosa GN=carB PE=3 SV=3) HSP 1 Score: 115.546 bits (288), Expect = 1.366e-39 Identity = 60/97 (61.86%), Postives = 72/97 (74.23%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GLMN Q A+ D +++E NPRASRTVPFVSK +G LAK AA VM+GK+L ++GFT+E+IP SVKEAV PF KF G D +LGPEM STG Sbjct: 819 LGVVGLMNVQMAVQGE-DIFVIEVNPRASRTVPFVSKCVGESLAKVAARVMAGKTLAEVGFTQEIIPPFFSVKEAVFPFAKFPGVDPILGPEMKSTG 914 HSP 2 Score: 68.5514 bits (166), Expect = 1.366e-39 Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ SF AFAKAQ+ A + LP +G F+S+ + KP ++A + +GF +V+T+GTA +E G+ V RV K+ Sbjct: 915 EVMGVGDSFAEAFAKAQLGASEILPTAGCAFISVREDDKPFAAQVAGDLVALGFEVVATAGTARVIEAAGLPVRRVNKV 993 The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 231
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bpback to top |