CX287284

Overview
NameCX287284
Unique NameCX287284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14851 contig Ccv1_Contig14851:72..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ANASP (Carbamoyl-phosphate synthase large chain OS=Anabaena sp. (strain PCC 7120) GN=carB PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.728e-46
Identity = 67/101 (66.34%), Postives = 80/101 (79.21%), Query Frame = 2
Query:    5 LNVCGLMNCQYAI----TTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L+V GLMN Q+A+    + S   Y+LEANPRASRTVPFVSKA G PLAK A+L+MSGK+L +L FT+EVIP H++VKEAVLPF KF G D +LGPEM STG
Sbjct:  845 LSVVGLMNIQFAVIGASSYSPQVYILEANPRASRTVPFVSKATGVPLAKLASLIMSGKTLEELNFTQEVIPSHIAVKEAVLPFNKFPGTDTILGPEMRSTG 945          

HSP 2 Score: 75.8702 bits (185), Expect = 1.728e-46
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID  F  AFAKA++ AG++LPL+GTVF+S++D  K     +   F+D+GF +++T GT   +   G+ VE VLK+
Sbjct:  946 EVMGIDSDFGRAFAKAELGAGERLPLTGTVFVSMSDRDKSAAVPVVREFIDLGFKVMATFGTRRVLLENGLNVELVLKL 1024          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_SYNY3 (Carbamoyl-phosphate synthase large chain OS=Synechocystis sp. (strain PCC 6803) GN=carB PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.405e-45
Identity = 71/98 (72.45%), Postives = 80/98 (81.63%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGD-AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LNV GLMN QYA+   GD  Y+LEANPRASRTVP+VSKA G PLAK A+LVMSGK+L +LG T+E IP+HV+VKEAVLPF KF G D LLGPEM STG
Sbjct:  828 LNVVGLMNIQYAV--QGDQVYILEANPRASRTVPYVSKATGRPLAKIASLVMSGKTLEELGVTEEFIPQHVAVKEAVLPFSKFPGADTLLGPEMRSTG 923          

HSP 2 Score: 67.781 bits (164), Expect = 5.405e-45
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGI-AVERVLKM 531
            EVMGID  F  AFAKA++ AG  L  +GTVF+S++D TK     +    +D+GF +V+TSGT   +   GI  VE VLK+
Sbjct:  924 EVMGIDSDFGKAFAKAELGAGVILATTGTVFVSMSDRTKEAAVPVVRELIDLGFKVVATSGTQKVLREHGIEGVEVVLKL 1003          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_RHOBA (Carbamoyl-phosphate synthase large chain OS=Rhodopirellula baltica GN=carB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.737e-43
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 2
Query:    2 RLNVCGLMNCQYAITTSGDA---YLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            RLNV GLMN Q+A+   G     Y+LE NPRASRTVPFV+KA G P+A  A  VM+GK+L +L  T+E IP+HVS+KE+VLPF KF G D++LGPEM STG
Sbjct:  823 RLNVVGLMNIQFAVKMEGTQPTLYILEVNPRASRTVPFVAKATGVPVANLATKVMAGKTLKELNVTEEPIPRHVSIKESVLPFRKFAGVDIVLGPEMRSTG 923          

HSP 2 Score: 73.1738 bits (178), Expect = 3.737e-43
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+   F IAFAK+Q+AAG  LP SG +FLSL+   K   E + ++ +++GF +++T GTA  +E  GIAV RV K+
Sbjct:  924 EVMGVSELFSIAFAKSQLAAGTVLPESGKIFLSLSANHKEAAESLGKSLIELGFELLATEGTAVRLEANGIAVTRVKKL 1002          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_PSESM (Carbamoyl-phosphate synthase large chain OS=Pseudomonas syringae pv. tomato GN=carB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.581e-41
Identity = 62/97 (63.92%), Postives = 70/97 (72.16%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q A+    D Y++E NPRASRTVPFVSK IG  LA  AA VM+GK+L +L FTKE+IP   SVKEAV PF KF G D +LGPEM STG
Sbjct:  819 LGVVGLMNVQLALQGE-DIYVIEVNPRASRTVPFVSKCIGVSLAMIAARVMAGKTLKELNFTKEIIPNFYSVKEAVFPFAKFPGVDPILGPEMKSTG 914          

HSP 2 Score: 74.7146 bits (182), Expect = 2.581e-41
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  +F  AFAKAQ+ A + LP  GT F+S+ D  KP +E +A   +++GF IV+T+GTA  +E  G+ V RV K+
Sbjct:  915 EVMGVGDTFGEAFAKAQMGASEVLPTGGTAFISVRDDDKPLVEAVARDLINLGFEIVATAGTAKLIEAAGLKVRRVNKV 993          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_PSEPK (Carbamoyl-phosphate synthase large chain OS=Pseudomonas putida (strain KT2440) GN=carB PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.645e-40
Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDA-YLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q A+   GD  Y++E NPRASRTVPFVSK IG  LA  AA VM+GK+L +LGFT+E+IP   SVKEAV PF KF G D +LGPEM STG
Sbjct:  819 LGVVGLMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKELGFTQEIIPNFYSVKEAVFPFAKFPGVDPILGPEMKSTG 914          

HSP 2 Score: 72.4034 bits (176), Expect = 1.645e-40
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  SF  AFAKAQ+ A + LP  GT F+S+ D  KP +  +A   + +GF +V+T+GTA  +E  G+ V RV K+
Sbjct:  915 EVMGVGDSFGEAFAKAQMGASEVLPTGGTAFISVRDDDKPQVAGVARDLIALGFEVVATAGTAKVIEAAGLKVRRVNKV 993          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_GEMAT (Carbamoyl-phosphate synthase large chain OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=carB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.143e-40
Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 2
Query:    2 RLNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            RL V GL+N QYA    G  Y++E NPRASRT PFVSKAIG  L   AA +M G++L ++GFT+E+IP ++SVKEAV PF KF+ +D +LGPEM STG
Sbjct:  819 RLGVVGLINVQYAYK-DGQVYVIEVNPRASRTAPFVSKAIGVSLPSVAARLMLGETLAEVGFTQEIIPPYISVKEAVFPFNKFREFDPVLGPEMRSTG 915          

HSP 2 Score: 73.1738 bits (178), Expect = 2.143e-40
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID  F  AF K+Q+AA   LP  GTVF +++D  KP    +A  F  IGF+I++TSGTA F   +GI V  VLK+
Sbjct:  916 EVMGIDDDFGAAFMKSQLAADNALPREGTVFFTVSDGDKPTAASLAGKFHSIGFSIMATSGTAAFFREQGIPVTSVLKV 994          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_XANAC (Carbamoyl-phosphate synthase large chain OS=Xanthomonas axonopodis pv. citri GN=carB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.143e-40
Identity = 66/101 (65.35%), Postives = 77/101 (76.24%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTS--GD--AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LNV GLMN Q+A+  +  GD   YLLE NPRASRTVPFVSKAIG PLAK AA  M+GK+L + G TKE++P + SVKEA+ PF KFQG D +LGPEM STG
Sbjct:  821 LNVVGLMNTQFAVQVNEAGDDIVYLLEVNPRASRTVPFVSKAIGMPLAKIAARCMAGKTLAEQGATKEIVPDYYSVKEAIFPFAKFQGVDPILGPEMRSTG 921          

HSP 2 Score: 63.1586 bits (152), Expect = 2.143e-40
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  SF  AFA+AQ A G K P  G  F+S+ D  K  +  +A+A ++ GFT+V+T GT  +++  G++ E V K+
Sbjct:  922 EVMGVGRSFSAAFARAQEAGGIKAPPLGKAFVSVRDPDKQRVLPVAQALVERGFTLVATRGTGAWLQQNGLSCEIVNKV 1000          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ARCFU (Carbamoyl-phosphate synthase large chain OS=Archaeoglobus fulgidus GN=carB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.740e-40
Identity = 62/97 (63.92%), Postives = 72/97 (74.23%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LNV GL+N QYA+   G  Y+LEANPRASRTVPFVSKA G PLAK AA +M GK L +LG  +++  KHV+VKEAV PF K  G D +LGPEM STG
Sbjct:  821 LNVVGLINIQYAVK-DGKVYVLEANPRASRTVPFVSKATGIPLAKIAAKLMMGKKLRELGVKEKLKLKHVAVKEAVFPFIKLPGVDPVLGPEMKSTG 916          

HSP 2 Score: 70.8626 bits (172), Expect = 4.740e-40
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTK-PHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID  F +A+ KA++AAG KLPL GTVF+S+    K   L  +A  F ++GF I++T GT  F+   GI  + +LK+
Sbjct:  917 EVMGIDYDFGLAYYKAELAAGMKLPLKGTVFISVRRKDKNDRLLYLARKFKELGFRIIATDGTRDFLVQNGIEADLILKI 996          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_XANCP (Carbamoyl-phosphate synthase large chain OS=Xanthomonas campestris pv. campestris GN=carB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.366e-39
Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTS--GD--AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LNV GLMN Q+A+  +  GD   YLLE NPRASRTVPFVSKA G PLAK AA  M+GK+L + G TKE++P + SVKEA+ PF KFQG D +LGPEM STG
Sbjct:  821 LNVVGLMNTQFAVQVNDAGDDIVYLLEVNPRASRTVPFVSKATGMPLAKIAARCMAGKTLAEQGATKEIVPDYYSVKEAIFPFAKFQGVDPILGPEMRSTG 921          

HSP 2 Score: 62.3882 bits (150), Expect = 1.366e-39
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  SF  AFA+AQ A G K P  G  F+S+ D  K  +  +A+A ++ GFT+V+T GT  +++  G++ E V K+
Sbjct:  922 EVMGVGRSFGAAFARAQEAGGIKAPPLGKAFVSVRDPDKQRVLPVAQALVERGFTLVATRGTGAWLQQHGLSCEIVNKV 1000          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_PSEAE (Carbamoyl-phosphate synthase large chain OS=Pseudomonas aeruginosa GN=carB PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 1.366e-39
Identity = 60/97 (61.86%), Postives = 72/97 (74.23%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q A+    D +++E NPRASRTVPFVSK +G  LAK AA VM+GK+L ++GFT+E+IP   SVKEAV PF KF G D +LGPEM STG
Sbjct:  819 LGVVGLMNVQMAVQGE-DIFVIEVNPRASRTVPFVSKCVGESLAKVAARVMAGKTLAEVGFTQEIIPPFFSVKEAVFPFAKFPGVDPILGPEMKSTG 914          

HSP 2 Score: 68.5514 bits (166), Expect = 1.366e-39
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  SF  AFAKAQ+ A + LP +G  F+S+ +  KP   ++A   + +GF +V+T+GTA  +E  G+ V RV K+
Sbjct:  915 EVMGVGDSFAEAFAKAQLGASEILPTAGCAFISVREDDKPFAAQVAGDLVALGFEVVATAGTARVIEAAGLPVRRVNKV 993          
The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
CARB_ANASP1.728e-4666.34Carbamoyl-phosphate synthase large chain OS=Anabae... [more]
CARB_SYNY35.405e-4572.45Carbamoyl-phosphate synthase large chain OS=Synech... [more]
CARB_RHOBA3.737e-4361.39Carbamoyl-phosphate synthase large chain OS=Rhodop... [more]
CARB_PSESM2.581e-4163.92Carbamoyl-phosphate synthase large chain OS=Pseudo... [more]
CARB_PSEPK1.645e-4064.29Carbamoyl-phosphate synthase large chain OS=Pseudo... [more]
CARB_GEMAT2.143e-4059.18Carbamoyl-phosphate synthase large chain OS=Gemmat... [more]
CARB_XANAC2.143e-4065.35Carbamoyl-phosphate synthase large chain OS=Xantho... [more]
CARB_ARCFU4.740e-4063.92Carbamoyl-phosphate synthase large chain OS=Archae... [more]
CARB_XANCP1.366e-3964.36Carbamoyl-phosphate synthase large chain OS=Xantho... [more]
CARB_PSEAE1.366e-3961.86Carbamoyl-phosphate synthase large chain OS=Pseudo... [more]

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Properties
Property NameValue
Genbank descriptionC01006H01SK Veg1 Citrus clementina cDNA clone C01006H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bp
TAGATTGAATGTGTGTGGACTCATGAATTGTCAGTATGCAATTACAACAT
CTGGGGATGCTTACTTGCTTGAGGCAAATCCCCGTGCTTCCCGTACCGTC
CCATTTGTGTCAAAAGCAATTGGGCACCCATTGGCCAAATATGCTGCTCT
TGTTATGTCGGGGAAGTCACTTAACGATTTAGGTTTCACAAAAGAGGTGA
TCCCCAAGCATGTGTCTGTTAAGGAAGCAGTTCTGCCCTTTGAGAAGTTC
CAAGGCTGGGATGTGCTGTTAGGGCCTGAGATGATAAGCACTGGGAGGTG
ATGGGTATAGACATGTCCTTCCCTATTGCATTTGCCAAGGCTCAAATTGC
TGCAGGGCAGAAGCTACCACTTTCAGGCACTGTGTTCCTCAGCTTAAATG
ACTTGACAAAGCCCCATCTTGAGAGAATTGCAGAGGCATTCTTAGATATA
GGATTCACGATTGTTTCAACTTCTGGGACAGCTCACTTTGTTGAATTAAA
AGGTATTGCTGTGGAAAGAGTGCTGAAGATGCA
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