CX287286

Overview
NameCX287286
Unique NameCX287286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287286_ssr410 microsatellite CX287286_ssr410:410..421. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig45 contig Ccv1_Contig45:1..525. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.271e-48
Identity = 93/107 (86.92%), Postives = 102/107 (95.33%), Query Frame = 1 
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            KWVPVTKLGRLV+EGKI  +EQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAF+VVGD++GHVGLGVKCSKEVATAIRGAIILAKLSV+P+
Sbjct:   44 KWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPI 150
[Close]
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 4.090e-47
Identity = 94/107 (87.85%), Postives = 99/107 (92.52%), Query Frame = 1 
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            KWVPVTKLGRLV  G I+ +EQIYLHSLP+KEYQIID LIG  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PV
Sbjct:   53 KWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPV 159
[Close]
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.090e-47
Identity = 94/107 (87.85%), Postives = 99/107 (92.52%), Query Frame = 1 
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PV
Sbjct:   52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPV 158
[Close]
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 4.090e-47
Identity = 94/107 (87.85%), Postives = 99/107 (92.52%), Query Frame = 1 
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PV
Sbjct:   52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPV 158
[Close]
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS2_DROME (40S ribosomal protein S2 OS=Drosophila melanogaster GN=sop PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 2.651e-46
Identity = 89/107 (83.18%), Postives = 101/107 (94.39%), Query Frame = 1 
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +WVPVTKLGRLVREGKI+SLE+IYL+SLPIKE++IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GH+GLGVKCSKEVATAIRGAIILAKLSV+PV
Sbjct:   42 EWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPV 148
[Close]
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 9.429e-44
Identity = 87/107 (81.31%), Postives = 99/107 (92.52%), Query Frame = 1 
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +WVPVTKLGRLV++ KI+SLE+IYL+SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS+IPV
Sbjct:   44 EWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPV 150
[Close]
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS2_URECA (40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.232e-43
Identity = 86/107 (80.37%), Postives = 99/107 (92.52%), Query Frame = 1 
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +WVPVTKLGRLV++ KI++LE+IYL SLPIKE++IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PV
Sbjct:   45 EWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPV 151
[Close]
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS2_RAT (40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.583e-43
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1 
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PV
Sbjct:   59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPV 165
[Close]
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 3.583e-43
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1 
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PV
Sbjct:   59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPV 165
[Close]
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS2_HUMAN (40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 6.112e-43
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1 
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PV
Sbjct:   59 EWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPV 165
The following BLAST results are available for this feature:
BLAST of CX287286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS24_ARATH1.271e-4886.9240S ribosomal protein S2-4 OS=Arabidopsis thaliana... [more]
RS23_ARATH4.090e-4787.8540S ribosomal protein S2-3 OS=Arabidopsis thaliana... [more]
RS22_ARATH4.090e-4787.8540S ribosomal protein S2-2 OS=Arabidopsis thaliana... [more]
RS21_ARATH4.090e-4787.8540S ribosomal protein S2-1 OS=Arabidopsis thaliana... [more]
RS2_DROME2.651e-4683.1840S ribosomal protein S2 OS=Drosophila melanogaste... [more]
RS2_ICTPU9.429e-4481.3140S ribosomal protein S2 OS=Ictalurus punctatus GN... [more]
RS2_URECA1.232e-4380.3740S ribosomal protein S2 OS=Urechis caupo GN=RPS2 ... [more]
RS2_RAT3.583e-4379.4440S ribosomal protein S2 OS=Rattus norvegicus GN=R... [more]
RS2_MOUSE3.583e-4379.4440S ribosomal protein S2 OS=Mus musculus GN=Rps2 P... [more]
RS2_HUMAN6.112e-4379.4440S ribosomal protein S2 OS=Homo sapiens GN=RPS2 P... [more]

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Properties
Property NameValue
Genbank descriptionC01006H03SK Veg1 Citrus clementina cDNA clone C01006H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287286 ID=CX287286; Name=CX287286; organism=Citrus clementina; type=EST; length=525bp
GAATTCGGCACGAGGGTCGCCTCGCATTTTTCACTCTCCCAAAGCCCAAA
CCCTAGCTTCAATCCCTAAACACACAAGAACAAAACCATGGCTGAACGAG
GTGGCGAGCGCGGTGCATTCGGACGCGGCTTCGGCCGTGGTGGACGGGGC
GACCGTGGAGGCCCACGTGGCCGTCGCCGCGCTGGACGCAGAGAGGAAGA
AGAGAAGTGGGTCCCAGTCACGAAACTCGGCCGTCTGGTGAGAGAAGGCA
AGATCAGGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCAATCAAGGAG
TATCAAATCATCGACACGCTTATCGGCCACAAATTGAAGGACGAGGTCAT
GAAGATCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGGT
TCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGGC
GTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATATT
GGCGAAGCTGTCAGTGATTCCGGTG
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