CX287287

Overview
NameCX287287
Unique NameCX287287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2482 contig Ccv1_Contig2482:5..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: ENPL_CATRO (Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.441e-21
Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 1
Query:  250 GIRCDAAVADKEAPDTS-------GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLL--GDAGDLEIRIKPDPE 507
            G+  D+ VA +EA   S        EKFE+QAEVSRLMD+I++SLYS+K++FLREL+SNASDALDK+RFL++T+  +L  GD   LEI+IK D E
Sbjct:   53 GLSTDSDVAKREAESMSMRNLRSDAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKEILGEGDTAKLEIQIKLDKE 147          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: ENPL_HORVU (Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.719e-21
Identity = 52/96 (54.17%), Postives = 71/96 (73.96%), Query Frame = 1
Query:  250 GIRCDAAVADKEAPD-------TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLL--GDAGDLEIRIKPDPEN 510
            G+  D+ V  +E+          S EKFE+QAEVSRLMD+I++SLYS+K++FLREL+SNASDALDK+RFL++T+  ++  GD   LEI+IK D EN
Sbjct:   53 GLSTDSEVVQRESESISRKTLRNSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKEVMGEGDTAKLEIQIKLDKEN 148          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: ENPL_ARATH (Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.833e-19
Identity = 51/93 (54.84%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  250 GIRCDAAVADKEAPDTS-------GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLL--GDAGDLEIRIKPD 501
            G+  D+ V  +E+   S        EKFE+QAEVSRLMD+I++SLYS+K++FLREL+SNASDALDK+RFL++T+  +L  GD   LEI+IK D
Sbjct:   52 GLSTDSDVVHRESESMSKKTLRSNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKDVLGEGDTAKLEIQIKLD 144          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_MYXXD (Chaperone protein htpG OS=Myxococcus xanthus (strain DK 1622) GN=htpG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.896e-18
Identity = 42/66 (63.64%), Postives = 55/66 (83.33%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            E   +QAE+++L+ L+++SLYSHKE+FLRELVSNASDALDKLRF ++TEP LL D   LE+R+ PD
Sbjct:   10 ETHAFQAEINQLLSLVINSLYSHKEIFLRELVSNASDALDKLRFRAITEPELLADEPALELRLIPD 75          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_HALHL (Chaperone protein htpG OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=htpG PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 41/72 (56.94%), Postives = 58/72 (80.56%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            DT  E  E+QAEV +L+ L++HS+YS++EVFLREL+SNASDA+DKLRF ++ + SL  D  +L+IR++ DPE
Sbjct:    4 DTQSETLEFQAEVQQLLSLMIHSVYSNREVFLRELISNASDAIDKLRFEALQQESLYEDDPELKIRVEADPE 75          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: ENPL_DICDI (Endoplasmin homolog OS=Dictyostelium discoideum GN=grp94 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 44/81 (54.32%), Postives = 62/81 (76.54%), Query Frame = 1
Query:  274 ADKEAPDTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDA--GDLEIRIKPDPEN 510
            A+ +  +  GEKF +Q EV++LM++I++SLYS KE+FLREL+SNASDALDK+RFL++T   LLG+    +L+I IK D  N
Sbjct:   40 AEAKLIEEKGEKFTFQTEVNKLMNIIINSLYSKKEIFLRELISNASDALDKIRFLALTNADLLGEGEQSNLDIHIKIDKAN 120          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP90_ASPFU (Heat shock protein 90 OS=Aspergillus fumigatus GN=hsp90 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 41/71 (57.75%), Postives = 58/71 (81.69%), Query Frame = 1
Query:  298 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            S E FE+QAE+S+L+ LI++++YS+KE+FLREL+SNASDALDK+R+ S+++P+ L    DL I I PD EN
Sbjct:    2 SSETFEFQAEISQLLSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPTKLDTGKDLRIDIIPDKEN 72          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP83_LEIIN (Heat shock protein 83-1 OS=Leishmania infantum GN=HSP83-1 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 40/69 (57.97%), Postives = 58/69 (84.06%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDA DK+R+ S+T+PS+LG++  L IR+ PD EN
Sbjct:    3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKEN 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP83_LEIAM (Heat shock protein 83 OS=Leishmania amazonensis GN=HSP83 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 39/69 (56.52%), Postives = 58/69 (84.06%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            E F +QAE+++LM LI+++ YS+KE+FLR+++SNASDA DK+R+ S+T+PS+LGDA  L +R+ PD EN
Sbjct:    3 ETFAFQAEINQLMSLIINTFYSNKEIFLRDVISNASDACDKIRYQSLTDPSVLGDATRLCVRVVPDKEN 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP90_PODAN (Heat shock protein 90 homolog OS=Podospora anserina GN=MOD-E PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.822e-17
Identity = 42/69 (60.87%), Postives = 57/69 (82.61%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            E FE+QAE+S+L+ LI++++YS+KE+FLRELVSNASDALDK+R+ S+++PS L    DL I I PD EN
Sbjct:    3 ETFEFQAEISQLLSLIINTVYSNKEIFLRELVSNASDALDKIRYESLSDPSKLDTGKDLRIDIIPDKEN 71          
The following BLAST results are available for this feature:
BLAST of CX287287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
ENPL_CATRO7.441e-2156.84Endoplasmin homolog OS=Catharanthus roseus GN=HSP9... [more]
ENPL_HORVU9.719e-2154.17Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1[more]
ENPL_ARATH1.833e-1954.84Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD... [more]
HTPG_MYXXD5.896e-1863.64Chaperone protein htpG OS=Myxococcus xanthus (stra... [more]
HTPG_HALHL2.241e-1756.94Chaperone protein htpG OS=Halorhodospira halophila... [more]
ENPL_DICDI2.241e-1754.32Endoplasmin homolog OS=Dictyostelium discoideum GN... [more]
HSP90_ASPFU2.926e-1757.75Heat shock protein 90 OS=Aspergillus fumigatus GN=... [more]
HSP83_LEIIN2.926e-1757.97Heat shock protein 83-1 OS=Leishmania infantum GN=... [more]
HSP83_LEIAM2.926e-1756.52Heat shock protein 83 OS=Leishmania amazonensis GN... [more]
HSP90_PODAN3.822e-1760.87Heat shock protein 90 homolog OS=Podospora anserin... [more]

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Properties
Property NameValue
Genbank descriptionC01006H04SK Veg1 Citrus clementina cDNA clone C01006H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287287 ID=CX287287; Name=CX287287; organism=Citrus clementina; type=EST; length=557bp
GTTCAAACCATCTTATTAAGCCAGCCCATTATCTTCTTCTCTCTCTGTAT
TCGAAGCCTTTTAATGGCTCCAGTTCTGAGCAGAACATTAGCCACTACCT
CTTTAGTGTCACTTCCAACTTCAACTCCTTTTTCTTTTAAACACTCCAAC
AACAAGGCCTTCAATTTCAGAAGCGCTTTTTTGCCGAGAAGTGGCGGCTT
AACTTGTGCTGGATTGAAGTGGAACCTTCAGAAGAGGAATAAAAGAGTCG
GGATACGGTGTGATGCTGCTGTTGCTGACAAAGAGGCCCCTGATACTTCT
GGTGAGAAGTTCGAGTACCAAGCCGAGGTCAGTCGCCTGATGGACTTGAT
TGTTCATAGTCTGTACAGCCACAAGGAGGTGTTCCTGCGAGAGCTTGTGA
GCAATGCAAGTGATGCTTTGGATAAGTTGAGATTTTTAAGTGTTACCGAG
CCCTCTCTTCTTGGAGATGCTGGCGATCTTGAGATTCGCATCAAGCCTGA
TCCAGAAAATGGGACCATCACCATAACGGATACTGGTATTGGAATGACTA
AAGAAGA
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