CX287288

Overview
NameCX287288
Unique NameCX287288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig702 contig Ccv1_Contig702:226..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287288 vs. ExPASy Swiss-Prot
Match: COPT1_ARATH (Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:  283 TFYWGNEAEVLFSGWPGKRAGMYALALIFVFTLGVIAEWLTHSWLIKEGTTNVAGR---IIKTILHAIRVSLGYXXXXXXXXFNAGIFL 540
            TF+WG   EVLFSGWPG  +GMYAL LIFVF L V+ EWL HS L++  T + A R   +I+T ++ +R+ L Y        FNAG+FL
Sbjct:   45 TFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFL 133
The following BLAST results are available for this feature:
BLAST of CX287288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COPT1_ARATH2.234e-1950.56Copper transporter 1 OS=Arabidopsis thaliana GN=CO... [more]
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Properties
Property NameValue
Genbank descriptionC01006H05SK Veg1 Citrus clementina cDNA clone C01006H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287288 ID=CX287288; Name=CX287288; organism=Citrus clementina; type=EST; length=540bp
AGGCCTCGTGCCGATCTCCACAAAACCCCCCATCGGTGCATAATAATAAT
TCTGTACTATCATTTGCTTCCCTTCATCCGAACCCTAAATTCCTCAATCT
TGTTTCAACCAATTATCTGATTGGATCCAACCAAAAAGCCGAAATCTAAT
TCATTGATTAATTCTATTGTATGTATAATTTTTTCAGACATGAACGATAG
TCACAGCCATGACCCCCCGCCTACGAAGAACGGCACCGGTGAAATGATGA
TGCATCTCCACAAGAAAATGATGATGCATATGACCTTCTACTGGGGCAAT
GAAGCAGAAGTCCTCTTCTCCGGTTGGCCCGGCAAAAGGGCAGGCATGTA
TGCATTAGCCCTAATTTTTGTATTTACGTTGGGGGTCATTGCAGAGTGGC
TGACCCACAGCTGGCTTATCAAAGAGGGCACGACCAATGTTGCCGGAAGG
ATCATTAAAACGATCTTGCATGCTATTAGGGTTAGTCTTGGATATCTGCT
GATGCTTTCTCTCATGTCGTTCAACGCTGGAATTTTTCTT
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