CX287294

Overview
NameCX287294
Unique NameCX287294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length352
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287294 vs. ExPASy Swiss-Prot
Match: UP12_ORYSJ (Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.171e-19
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 3
Query:    3 VNVESGEFDTEGLLAKAKFHVSYKGKAIIKPLQQVLANSLRYFLRRPTTEEASF 164
            + V+SGEFDTEGLLAKAKFHVSY+GK +IK LQQVLANSLRYFLRRPTTEE S+
Sbjct:  230 ITVQSGEFDTEGLLAKAKFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 283          
BLAST of CX287294 vs. ExPASy Swiss-Prot
Match: UP12_ORYSI (Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_027381 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.171e-19
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 3
Query:    3 VNVESGEFDTEGLLAKAKFHVSYKGKAIIKPLQQVLANSLRYFLRRPTTEEASF 164
            + V+SGEFDTEGLLAKAKFHVSY+GK +IK LQQVLANSLRYFLRRPTTEE S+
Sbjct:  230 ITVQSGEFDTEGLLAKAKFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 283          
The following BLAST results are available for this feature:
BLAST of CX287294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UP12_ORYSJ1.171e-1983.33Unknown protein DS12 from 2D-PAGE of leaf, chlorop... [more]
UP12_ORYSI1.171e-1983.33Unknown protein DS12 from 2D-PAGE of leaf, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionC01006H11SK Veg1 Citrus clementina cDNA clone C01006H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287294 ID=CX287294; Name=CX287294; organism=Citrus clementina; type=EST; length=352bp
ATGTCAATGTTGAATCGGGAGAGTTTGATACTGAGGGGTTGTTGGCTAAG
GCAAAGTTTCATGTCAGCTACAAGGGTAAAGCCATTATCAAGCCTCTCCA
ACAGGTTCTTGCTAACAGTTTGCGATATTTCTTGAGGCGACCAACAACTG
AGGAGGCAAGTTTTTGAGCTGTTGTTGAAGACTCCACCAACCAAATTCAG
GATTACACACACTTGATGAATTTTTTTTATTTCTCTACCCAGTAAACATT
CACAAGGGGAATTACAATATGCTGTCTCCCTAATCTCCTTACATAAAATA
AATAAAACATGAGATATATATAAAAAAAAAAGAAAAAACTGACCATGAAT
AA
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