CX287295

Overview
NameCX287295
Unique NameCX287295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length439
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7993 contig Ccv1_Contig7993:432..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287295 vs. ExPASy Swiss-Prot
Match: DR102_ARATH (DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 2.591e-52
Identity = 98/144 (68.06%), Postives = 112/144 (77.78%), Query Frame = 1 
Query:   22 DTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKN---DKLXXXXXXXT--CSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDV 438
            D W+KTPFK+PCPASG +PW   IS F D S++EM  IGK+   D         T  C ICCL KNRE  PV+++PGGSMKI+RE+PTSAIVRFKAGSVEPAHHHTFGHDLVV++GKKSVWNL+K ER DL  GDYLFTPAGDV
Sbjct:  129 DAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDETTASCVICCLAKNREFTPVDIMPGGSMKIVRETPTSAIVRFKAGSVEPAHHHTFGHDLVVIKGKKSVWNLSKKERADLVDGDYLFTPAGDV 272
The following BLAST results are available for this feature:
BLAST of CX287295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DR102_ARATH2.591e-5268.06DNA-damage-repair/toleration protein DRT102 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC01008A01SK Veg1 Citrus clementina cDNA clone C01008A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287295 ID=CX287295; Name=CX287295; organism=Citrus clementina; type=EST; length=439bp
TGCAGGAATTCGGCACGAGGGGACACGTGGCTTAAAACCCCTTTTAAAGC
CCCATGCCCCGCGTCGGGTTTTAAGCCATGGGAAGAGAACATATCGTGTT
TTTTCGACAAATCGATGACCGAAATGCCCCTTATTGGTAAAAATGATAAA
TTAGATAGTGATTCTAGTAGCAGTACTTGTAGCATATGTTGTTTAGTTAA
GAACAGGGAATTGAATCCTGTGGAAATGATTCCCGGTGGGTCAATGAAGA
TTATTAGGGAGAGTCCGACATCGGCCATTGTGAGGTTTAAGGCCGGGAGT
GTGGAGCCCGCGCATCACCATACATTTGGGCATGATCTGGTGGTGCTCCA
AGGGAAGAAGAGTGTGTGGAATCTGACTAAAGGGGAAAGGTTTGATTTGA
CTGTTGGGGATTACTTGTTTACACCGGCTGGTGATGTGC
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