CX287301

Overview
NameCX287301
Unique NameCX287301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length170
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig683 contig Ccv1_Contig683:16..185. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287301 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.715e-23
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKI 168
            LPSHPVV+TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKI
Sbjct:  799 LPSHPVVATGGIPAPEQSQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKI 854          
BLAST of CX287301 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.925e-23
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKI 168
            LPSHPVV TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKI
Sbjct:  796 LPSHPVVPTGGIPAPEQSQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKI 851          
BLAST of CX287301 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.925e-23
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKI 168
            LPSHPVV TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKI
Sbjct:  796 LPSHPVVPTGGIPAPEESQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKI 851          
BLAST of CX287301 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.925e-23
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKI 168
            LPSHPVV TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKI
Sbjct:  796 LPSHPVVPTGGIPAPEQSQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKI 851          
BLAST of CX287301 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.112e-22
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKI 168
            LPSHPVV TGGIP+P+KS+PLG I+AAPWGSALILPISYTYIAMMGSKGLT+ASKI
Sbjct:  797 LPSHPVVPTGGIPSPDKSEPLGAISAAPWGSALILPISYTYIAMMGSKGLTDASKI 852          
BLAST of CX287301 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.234e-22
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKI 168
            LPSHPVV TGGIPAPE  QPLG+I+AAPWGSALILPISYTYIAMMGS+GLT+ASKI
Sbjct:  818 LPSHPVVPTGGIPAPENPQPLGSISAAPWGSALILPISYTYIAMMGSQGLTDASKI 873          
BLAST of CX287301 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.096e-21
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKI 168
            LPSHPV+ TGGIP PE++ PLGTI+AAPWGSALILPISYTYIAMMGS GLT+ASKI
Sbjct:  806 LPSHPVIPTGGIPEPEQTSPLGTISAAPWGSALILPISYTYIAMMGSGGLTDASKI 861          
BLAST of CX287301 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.576e-21
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKI 168
            LPSHPV+ TGGIP PEK+ PLG I+AAPWGSALILPISYTYIAMMGS GLT+ASKI
Sbjct:  800 LPSHPVIPTGGIPQPEKTAPLGAISAAPWGSALILPISYTYIAMMGSGGLTDASKI 855          
BLAST of CX287301 vs. ExPASy Swiss-Prot
Match: GCSP_MOUSE (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Mus musculus GN=Gldc PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.759e-12
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKI 168
            LPSHPV+S   I   E + P+GT++AAPWGS+ ILPIS+ YI MMG KGL EA++I
Sbjct:  785 LPSHPVIS---IKPTEGTWPVGTVSAAPWGSSSILPISWAYIKMMGGKGLKEATEI 837          
The following BLAST results are available for this feature:
BLAST of CX287301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GCSPA_FLAPR1.715e-2391.07Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_FLATR2.925e-2391.07Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_FLAAN2.925e-2391.07Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR2.925e-2391.07Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSP_SOLTU1.112e-2287.50Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_PEA3.234e-2287.50Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP1_ARATH2.096e-2183.93Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSP2_ARATH3.576e-2183.93Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP_MOUSE6.759e-1260.71Glycine dehydrogenase [decarboxylating], mitochond... [more]
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Properties
Property NameValue
Genbank descriptionC01008A08SK Veg1 Citrus clementina cDNA clone C01008A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287301 ID=CX287301; Name=CX287301; organism=Citrus clementina; type=EST; length=170bp
CTGCCTTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCGATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGC
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