CX287308

Overview
NameCX287308
Unique NameCX287308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length396
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9703 contig Ccv1_Contig9703:45..439. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287308 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.144e-19
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -2
Query:  147 MSDTCGNCDCVDRSQCVKKGSNYAADFVETNLSFVSPVVVMDVQAVEAEGNSKYGPPCACVNCTCG 344
            MSDTCGNCDC D++QCVKKGS+Y AD +ET  S ++  VVMD  A E +G  K GP C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CX287308 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.497e-16
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = -2
Query:  144 TCGNCDCVDRSQCVKKGSNYAADFVETNLSFVSPVVVMDVQAVEAEGNSKYGPPCACVNCTCGS 335
            TCGNCDCVD+SQCVKKG++Y  D VET  S+V  V+V   +A E +G  K G  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CX287308 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = -2
Query:  150 MSDTCGNCDCVDRSQCVKKGSNYAADFVETNLSFVSPVVVMDVQAVEAEGNSKYGPPCACVNCTC 344
            MSD CGNCDC D SQCVKKG+  + D VET+ S++   VVM V A E+ G  K G  C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGN--SIDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CX287308 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.145e-12
Identity = 33/65 (50.77%), Postives = 38/65 (58.46%), Query Frame = -2
Query:  150 MSDTCGNCDCVDRSQCVKKGSNYAADFVETNLSFVSPVVVMDVQAVEAEGNSKYGPPCACVNCTC 344
            MS  C NCDC D SQC KKG ++    VET    +   V+MD  A E  GN K GP CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMD-TVIMDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CX287308 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.145e-12
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = -2
Query:  147 MSDTCGNCDCVDRSQCVKKGSNYAADFVETNLSFVSPVVVMDVQAVEAEGNSKYGPPCACVNCTCG 344
            MS  C NCDC D +QCVKKG++Y    VET    +  V V D  A E +G  K G  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CX287308 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.145e-12
Identity = 32/66 (48.48%), Postives = 38/66 (57.58%), Query Frame = -2
Query:  147 MSDTCGNCDCVDRSQCVKKGSNYAADFVETNLSFVSPVVVMDVQAVEAEGNSKYGPPCACVNCTCG 344
            MSD CGNCDC D+SQCVKKG++Y    VE   S        +V A E  G  K G  C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CX287308 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.145e-12
Identity = 32/66 (48.48%), Postives = 38/66 (57.58%), Query Frame = -2
Query:  147 MSDTCGNCDCVDRSQCVKKGSNYAADFVETNLSFVSPVVVMDVQAVEAEGNSKYGPPCACVNCTCG 344
            MSD CGNCDC D+SQCVKKG++Y    VE   S        +V A E  G  K G  C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
The following BLAST results are available for this feature:
BLAST of CX287308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MT3_CARPA1.144e-1962.12Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC4.497e-1656.25Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE1.447e-1458.46Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV5.145e-1250.77Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO5.145e-1250.00Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ5.145e-1248.48Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI5.145e-1248.48Metallothionein-like protein 3A OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionC01008B03SK Veg1 Citrus clementina cDNA clone C01008B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287308 ID=CX287308; Name=CX287308; organism=Citrus clementina; type=EST; length=396bp
TCGGCACGAGGCCTCGTGCCGATTCGGCACGAGGGTTTTTTTTTTTTTTT
TTTTTAATCACCCTTACATTATTCTTAACCCCCACAATATTTAGGCACAC
TTGCAGCTTCTTATTTTTTGCTGCATGTGTTTGCTTATTAGTGACTACCA
CAAGTGCAGTTCACACAAGCGCAGGGGGGGCCGTACTTGCTGTTACCTTC
AGCCTCAACAGCCTGAACGTCCATGACAACAACGGGGCTGACAAAGCTCA
AGTTAGTCTCGACGAAGTCAGCAGCATAGTTGCTTCCCTTCTTCACACAC
TGGCTCCTGTCAACACAGTCGCAGTTGCCGCAGGTGTCCGACATGTTGAT
TGAGCTTATAACTTAGAACTTAAAACTGGAAATAGAGGGCTCTTTA
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