CX287335

Overview
NameCX287335
Unique NameCX287335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9498 contig Ccv1_Contig9498:38..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287335 vs. ExPASy Swiss-Prot
Match: NPL41_ARATH (NPL4-like protein 1 OS=Arabidopsis thaliana GN=At3g63000 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 8.029e-40
Identity = 76/111 (68.47%), Postives = 100/111 (90.09%), Query Frame = 3
Query:   99 LLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLSYDGERNVR-GPSFNPAGSFGRKMTMDD 428
            +LR+RSRDGLERV+VDG H+TV++LKT+IQ QL+IP+ +QTLSTN+NLLLAKSPSD L FTDMA+P+  +SSLN++HGS+V+L+Y+GER +R GP+  PAGSFGRKMT++D
Sbjct:    3 MLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYEGERTIRGGPAVTPAGSFGRKMTVED 113          
BLAST of CX287335 vs. ExPASy Swiss-Prot
Match: NPL42_ARATH (NPL4-like protein 2 OS=Arabidopsis thaliana GN=At2g47970 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.877e-39
Identity = 75/112 (66.96%), Postives = 98/112 (87.50%), Query Frame = 3
Query:   96 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLSYDGERNVRG-PSFNPAGSFGRKMTMDD 428
            M+LRIRSRDGLERVT +GAH+TV++LKT+I  QL+IP+  QTLSTN++LLLAK+P+DLL FTD+ +P+ PLSSLN+ HGS+++L+YDGER++ G P   PAGSFGRKMT+DD
Sbjct:    2 MMLRIRSRDGLERVTAEGAHITVSQLKTLIADQLQIPLHKQTLSTNRDLLLAKTPADLLAFTDLTDPNLPLSSLNLGHGSMLYLAYDGERSIPGAPPVTPAGSFGRKMTVDD 113          
BLAST of CX287335 vs. ExPASy Swiss-Prot
Match: NPL4_ORYSJ (NPL4-like protein OS=Oryza sativa subsp. japonica GN=Os01g0377700 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.969e-18
Identity = 55/116 (47.41%), Postives = 75/116 (64.66%), Query Frame = 3
Query:   96 MLLRIRSRDGLERVTV-DGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLSYDGERNVRGP----SFNPAGSFGRKMTMDD 428
            M+LRIRSRDG +R+TV D A  TV +L+ +I +++ +PV  Q LS +  LLL  S S  L    +A+P  PLSSL +S+GS V+LSY  +     P    + + AGSFG+KMTMDD
Sbjct:    1 MILRIRSRDGTDRITVPDPAAATVGDLQRLIAARVTVPVPLQRLSLDPALLLPSSASAAL----LADPAAPLSSLRLSNGSFVYLSYPPDARSSQPPPPKALSAAGSFGKKMTMDD 112          
The following BLAST results are available for this feature:
BLAST of CX287335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NPL41_ARATH8.029e-4068.47NPL4-like protein 1 OS=Arabidopsis thaliana GN=At3... [more]
NPL42_ARATH8.877e-3966.96NPL4-like protein 2 OS=Arabidopsis thaliana GN=At2... [more]
NPL4_ORYSJ2.969e-1847.41NPL4-like protein OS=Oryza sativa subsp. japonica ... [more]
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Properties
Property NameValue
Genbank descriptionC01008D09SK Veg1 Citrus clementina cDNA clone C01008D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287335 ID=CX287335; Name=CX287335; organism=Citrus clementina; type=EST; length=430bp
ACCGGAGGTAACACACCGACCCGAAATCACTACTTGTGCTGAAAGAAGCC
TCGACCCCTGTTACCTCGATTCGAAACCCCAAAACCGCACCAAACATGCT
GCTTCGCATCCGCAGCAGAGACGGCCTCGAGCGCGTCACAGTCGACGGCG
CACACGTCACAGTCGCAGAACTGAAAACCATAATCCAATCGCAGCTCCGA
ATCCCCGTCGAAAGCCAAACCCTATCCACTAACCAAAACCTCTTATTAGC
CAAATCACCCTCCGATCTCCTCCAATTCACCGACATGGCCAACCCAGACA
GGCCCTTATCTTCCCTCAACATCTCCCACGGCTCCATCGTTTTCTTATCC
TACGACGGCGAGCGAAACGTCAGGGGCCCCAGCTTCAACCCGGCCGGATC
CTTCGGCCGGAAGATGACCATGGACGATTT
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