CX287338

Overview
NameCX287338
Unique NameCX287338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1060 contig Ccv1_Contig1060:91..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAV (Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.090e-30
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV T  +E TS +PP +LFK FVL  D L+PK+ PQ +K+ E++ GDGGP +IKK  F EG+ + Y KH++D++DKEN  Y+YT I  EGDA   T++ +SYETK+V +P GGS
Sbjct:    1 MGVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYTLI--EGDALGDTLEKISYETKLVASPSGGS 113          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAR (Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.002e-29
Identity = 61/115 (53.04%), Postives = 79/115 (68.70%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV T   E TS +PPEKLFK F+L  D L+PKV P  VK  E++ GDGG  +IKK  F EG+ + Y KHRVD +DK+N  Y+YT I  EGDA    I++++Y+ K+V +PDGGS
Sbjct:    1 MGVFTYETEFTSVIPPEKLFKAFILDADNLIPKVAPTAVKGTEILEGDGGVGTIKKVTFGEGSQYAYVKHRVDGIDKDNLSYSYTLI--EGDALSDVIENIAYDIKLVASPDGGS 113          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: MAL12_MALDO (Major allergen Mal d 1 OS=Malus domestica PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 7.337e-27
Identity = 58/113 (51.33%), Postives = 77/113 (68.14%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDG 392
            MGV T   E TS +PP +LFK FVL  D L+PK+ PQ +K+ E++ GDGGP +IKK  F EG+ + Y KH++D++D+ N  Y YT I  EGDA   TI+ VSYETK+V +  G
Sbjct:    1 MGVYTFENEYTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSVDEANYSYAYTLI--EGDALTDTIEKVSYETKLVASGSG 111          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: MAL11_MALDO (Major allergen Mal d 1 OS=Malus domestica GN=MALD1 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 3.641e-26
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV T   E TS +PP +LFK FVL  D L+PK+ PQ +K  E++ G+GGP +IKK  F EG+ + Y KHR+D++D+ +  Y+YT I  EGDA   TI+ +SYETK+V    G +
Sbjct:    1 MGVYTFENEFTSEIPPSRLFKAFVLDADNLIPKIAPQAIKQAEILEGNGGPGTIKKITFGEGSQYGYVKHRIDSIDEASYSYSYTLI--EGDALTDTIEKISYETKLVACGSGST 113          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: PYRC1_PYRCO (Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.083e-25
Identity = 55/115 (47.83%), Postives = 77/115 (66.96%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MG+ T   E TS +PP +LFK FVL  D L+PK+ PQ +K+ E++ G+GGP +IKK  F EG+ + Y KHRVD++D+ +  Y YT I  EGDA   TI+ +SYE K+V +  G +
Sbjct:    1 MGLYTFENEFTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGNGGPGTIKKITFGEGSQYGYVKHRVDSIDEASYSYAYTLI--EGDALTDTIEKISYEAKLVASGSGST 113          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: BEV1G_BETVE (Major pollen allergen Bet v 1-G OS=Betula verrucosa GN=BETV1G PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.026e-25
Identity = 59/116 (50.86%), Postives = 75/116 (64.66%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVSYETKVVGTPDGG 395
            MGV    +E TS +P  +LFK F+L  D L+PKV PQ + +VE I G+GGP +IKK NF EG  +KY K RVD +D  N  YNY+ IEG   GD    T++ +S E K+V TPDGG
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILEGDNLIPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGD----TLEKISNEIKIVATPDGG 112          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: BEV1K_BETVE (Major pollen allergen Bet v 1-K OS=Betula verrucosa GN=BETV1K PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.171e-24
Identity = 57/115 (49.57%), Postives = 75/115 (65.22%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV    +E TS +P  +LFK F+L  DTL+PKV PQ + +VE I G+GGP +IKK  F EG+ +KY K RVD +D  N  Y+Y+ I  EG A   T++ +  E K+V TPDGGS
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMI--EGGALGDTLEKICNEIKIVATPDGGS 113          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: BEV1D_BETVE (Major pollen allergen Bet v 1-D/H OS=Betula verrucosa GN=BETV1D PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.171e-24
Identity = 59/116 (50.86%), Postives = 74/116 (63.79%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVSYETKVVGTPDGG 395
            MGV     E TS +P  +LFK F+L  D L+PKV PQ + +VE I G+GGP +IKK NF EG  +KY K RVD +D  N  YNY+ IEG   GD    T++ +S E K+V TPDGG
Sbjct:    1 MGVFNYEIETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGD----TLEKISNEIKIVATPDGG 112          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: BEV1C_BETVE (Major pollen allergen Bet v 1-C OS=Betula verrucosa GN=BETV1C PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.171e-24
Identity = 57/115 (49.57%), Postives = 75/115 (65.22%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV    +E TS +P  +LFK F+L  DTL+PKV PQ + +VE I G+GGP +IKK  F EG+ +KY K RVD +D  N  Y+Y+ I  EG A   T++ +  E K+V TPDGGS
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMI--EGGALGDTLEKICNEIKIVATPDGGS 113          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: BEV1B_BETVE (Major pollen allergen Bet v 1-B OS=Betula verrucosa GN=BETV1B PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.530e-24
Identity = 57/115 (49.57%), Postives = 74/115 (64.35%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV     E TS +P  +LFK F+L  DTL+PKV PQ + +VE I G+GGP +IKK  F EG+ +KY K RVD +D  N  Y+Y+ I  EG A   T++ +  E K+V TPDGGS
Sbjct:    1 MGVFNYETETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMI--EGGALGDTLEKICNEIKIVATPDGGS 113          
The following BLAST results are available for this feature:
BLAST of CX287338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PRU1_PRUAV7.090e-3053.04Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 P... [more]
PRU1_PRUAR6.002e-2953.04Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 S... [more]
MAL12_MALDO7.337e-2751.33Major allergen Mal d 1 OS=Malus domestica PE=1 SV=... [more]
MAL11_MALDO3.641e-2648.70Major allergen Mal d 1 OS=Malus domestica GN=MALD1... [more]
PYRC1_PYRCO3.083e-2547.83Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 ... [more]
BEV1G_BETVE4.026e-2550.86Major pollen allergen Bet v 1-G OS=Betula verrucos... [more]
BEV1K_BETVE1.171e-2449.57Major pollen allergen Bet v 1-K OS=Betula verrucos... [more]
BEV1D_BETVE1.171e-2450.86Major pollen allergen Bet v 1-D/H OS=Betula verruc... [more]
BEV1C_BETVE1.171e-2449.57Major pollen allergen Bet v 1-C OS=Betula verrucos... [more]
BEV1B_BETVE1.530e-2449.57Major pollen allergen Bet v 1-B OS=Betula verrucos... [more]

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Properties
Property NameValue
Genbank descriptionC01008D12SK Veg1 Citrus clementina cDNA clone C01008D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287338 ID=CX287338; Name=CX287338; organism=Citrus clementina; type=EST; length=403bp
GAGGGTTGATCGATAGTTTTCATATTCTTTCTTTGTTTAACTCTTAGACA
ATCATGGGTGTTCTCACGTTGAATGCAGAGGAAACAAGCACTCTCCCCCC
TGAAAAGTTGTTCAAACTTTTTGTCCTTCATTTCGACACCCTTCTGCCCA
AAGTCCTGCCTCAGGTTGTAAAGAACGTTGAATTGATTTCAGGGGATGGA
GGCCCTGTAAGCATCAAGAAGTTTAACTTTGTTGAAGGTGCTGATTGGAA
GTACTTTAAGCATAGGGTTGATGCATTGGACAAAGAGAACAAGATATACA
ATTACACGGCAATTGAAGGTGAGGGTGATGCTAACATCCCTACTATTGAT
CATGTTTCTTATGAGACTAAGGTTGTGGGCACCCCTGACGGAGGAAGCAA
GAG
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