CX287339

Overview
NameCX287339
Unique NameCX287339
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287339_ssr20 microsatellite CX287339_ssr20:20..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10799 contig Ccv1_Contig10799:19..422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_ARATH (Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.197e-48
Identity = 90/124 (72.58%), Postives = 105/124 (84.68%), Query Frame = 1
Query:   43 AASDRTVLQF----GPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            A S+ T+LQF      +SA TS +TA++HPLVIFN+CDC+VRRPD AERVIGTLLGS+LPDGTVDIRNSY VPHNE SDQVA+DI+YHH ML SHLKVN +E IVGW+STG GV GGS+LIH+F
Sbjct:    3 ATSEHTILQFVSPSSTASATTSVLTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDF 126          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_AEDAE (Eukaryotic translation initiation factor 3 subunit F OS=Aedes aegypti GN=eIF3-S5 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   97 NVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            N+T +VHP+V+F I D Y RR   +ERVIGTLLGSV   G V++ N + VPH E +DQV  ++ Y   +   + +VNP E IVGW++TG  VT  S++IHE+
Sbjct:    9 NLTVRVHPVVLFQIVDAYERRNADSERVIGTLLGSV-DKGVVEVTNCFCVPHKEHADQVEAELGYASDLYDLNRRVNPSENIVGWWATGQEVTNHSSVIHEY 109          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_CULQU (Eukaryotic translation initiation factor 3 subunit F OS=Culex quinquefasciatus GN=eIF3-S5 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.630e-21
Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   97 NVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            N+T +VHP+V+F I D Y RR   +ERVIGTLLGSV   G V++ N + VPH E +DQV  ++ Y   +   + +VNP E IVGW++TG  VT  S++IHE+
Sbjct:    9 NLTVRVHPVVLFQIVDAYERRNADSERVIGTLLGSV-EKGIVEVTNCFCVPHKEHADQVEAELGYASDLYDLNRRVNPSENIVGWWATGQEVTNHSSVIHEY 109          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EI3F1_DROAN (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila ananassae GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.630e-21
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 1
Query:   97 NVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            N+T +VHP+V+F + D Y RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVNP E +VGW++TG  VT  S++IHE+
Sbjct:    5 NLTVRVHPVVLFQVVDAYERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNPNESVVGWWATGNDVTNHSSVIHEY 105          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_PHANO (Eukaryotic translation initiation factor 3 subunit F OS=Phaeosphaeria nodorum GN=SNOG_04858 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.780e-21
Identity = 49/106 (46.23%), Postives = 70/106 (66.04%), Query Frame = 1
Query:   88 ATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            +T+ +   + P  +F+I D  +RRP   ERVIGTLLG+   DGT ++IRN Y VPH E ++QV +D++Y   ML  HL+ NP+EV+VGW++T   +   SALI  F
Sbjct:   24 STAPLNVAIQPQAVFSILDHSLRRPADQERVIGTLLGTRSEDGTEIEIRNCYAVPHTETAEQVEVDMDYQKQMLALHLRANPREVLVGWYATSSDLNTFSALIQNF 129          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_MALGO (Eukaryotic translation initiation factor 3 subunit F OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=MGL_1945 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.631e-21
Identity = 55/126 (43.65%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   40 MAASDRTVLQFGPSSAA---TSNVTA-KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHE 399
            +AAS    L F P+++    + ++TA KVHP+ +F+I D Y+RR     RVIGTLLG+   +  V++RN++ VPH E  D  Q+ LD E+H  ML  HL+V P EV++GW+ST   +   SALI +
Sbjct:    7 LAASSALHLSFPPAASGVFHSRSITAVKVHPVALFSILDHYLRRDVSQPRVIGTLLGT-RSESEVEVRNAFAVPHGESQDPWQIHLDAEHHRRMLDLHLRVRPDEVVLGWYSTNTELNSNSALIQD 131          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_SCHPO (Eukaryotic translation initiation factor 3 subunit F OS=Schizosaccharomyces pombe GN=eif3f PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.088e-21
Identity = 50/119 (42.02%), Postives = 75/119 (63.03%), Query Frame = 1
Query:   40 MAASDRTVLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALI 393
            MA   + VL     S+ +S +   + P V+F+I D   R+ +  +RVIGTLLG+   DG  ++I++ + VPHNE S+QV +++EYH  M   HLK NP+EV+VGW++T   +   SALI
Sbjct:    1 MALGTKHVLHLTKPSSRSSPLNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVEVEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALI 119          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_PANTR (Eukaryotic translation initiation factor 3 subunit F OS=Pan troglodytes GN=EIF3F PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.380e-20
Identity = 46/98 (46.94%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  109 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            ++HP+++ +I D Y RR + A RVIGTLLG+V    +V++ N + VPHNE  D+VA+D+E+   M + H KV+P E+I+GW++TG  +T  S LIHE+
Sbjct:   97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEY 193          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_MOUSE (Eukaryotic translation initiation factor 3 subunit F OS=Mus musculus GN=Eif3f PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.380e-20
Identity = 46/98 (46.94%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  109 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            ++HP+++ +I D Y RR + A RVIGTLLG+V    +V++ N + VPHNE  D+VA+D+E+   M + H KV+P E+I+GW++TG  +T  S LIHE+
Sbjct:   97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEY 193          
BLAST of CX287339 vs. ExPASy Swiss-Prot
Match: EIF3F_MACFA (Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.380e-20
Identity = 46/98 (46.94%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  109 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEF 402
            ++HP+++ +I D Y RR + A RVIGTLLG+V    +V++ N + VPHNE  D+VA+D+E+   M + H KV+P E+I+GW++TG  +T  S LIHE+
Sbjct:   97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEY 193          
The following BLAST results are available for this feature:
BLAST of CX287339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
EIF3F_ARATH1.197e-4872.58Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_AEDAE1.248e-2149.02Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_CULQU1.630e-2149.02Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROAN1.630e-2148.04Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PHANO2.780e-2146.23Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MALGO3.631e-2143.65Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_SCHPO8.088e-2142.02Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PANTR1.380e-2046.94Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MOUSE1.380e-2046.94Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MACFA1.380e-2046.94Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01008E01SK Veg1 Citrus clementina cDNA clone C01008E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287339 ID=CX287339; Name=CX287339; organism=Citrus clementina; type=EST; length=404bp
TTTGAATCGAGATCAGAAGAGAAGAAGAAGAAGATAAGAATGGCGGCAAG
CGACCGCACGGTGCTGCAATTCGGACCTTCATCAGCGGCGACGTCGAATG
TAACGGCGAAAGTTCACCCGTTGGTTATTTTCAACATCTGCGACTGTTAC
GTCAGACGCCCCGACCAGGCTGAACGCGTCATCGGCACGCTTCTTGGCTC
CGTTTTGCCCGATGGCACCGTCGATATCCGTAACTCCTACGTCGTTCCTC
ACAACGAGTTCTCCGATCAGGTTGCATTGGATATTGAATACCATCATACC
ATGTTAAAGTCACATCTAAAGGTGAATCCTCAGGAAGTGATTGTTGGATG
GTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTGCCTTGATCCATGAAT
TCTA
back to top