CX287350

Overview
NameCX287350
Unique NameCX287350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13620 contig Ccv1_Contig13620:917..1445. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C59_ARATH (Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.056e-54
Identity = 104/116 (89.66%), Postives = 109/116 (93.97%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGG 372
            ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEE +DSSLEFLILASDGLWDVV+NEEAV MIK I+DPEE AKRLM EAYQRGSADNITCVVVRF ++Q G
Sbjct:  170 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVGMIKAIEDPEEGAKRLMMEAYQRGSADNITCVVVRFFSDQAG 285          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C59_ORYSJ (Probable protein phosphatase 2C 59 OS=Oryza sativa subsp. japonica GN=Os06g0698300 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.513e-52
Identity = 100/114 (87.72%), Postives = 109/114 (95.61%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQ 366
            ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGD+LLKQYVVADPEI+EEV+DSSLEFLILASDGLWDVVTNEEAVAM+KPI D E+AAK+L+QEA QRGSADNITC+VVRFL  +
Sbjct:  201 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEVVDSSLEFLILASDGLWDVVTNEEAVAMVKPILDSEQAAKKLLQEASQRGSADNITCLVVRFLEQE 314          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C10_ORYSJ (Probable protein phosphatase 2C 10 OS=Oryza sativa subsp. japonica GN=Os02g0149800 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.513e-52
Identity = 98/111 (88.29%), Postives = 109/111 (98.20%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFL 357
            ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGD+LLKQYVVADPEI+EE++DSSLEFLILASDGLWDVV+N+EAV M++PIQDPE+AAKRL+QEAYQRGSADNIT V+VRFL
Sbjct:  219 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEIVDSSLEFLILASDGLWDVVSNKEAVDMVRPIQDPEQAAKRLLQEAYQRGSADNITVVIVRFL 329          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C45_ORYSJ (Probable protein phosphatase 2C 45 OS=Oryza sativa subsp. japonica GN=Os04g0659500 PE=2 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 7.312e-52
Identity = 100/119 (84.03%), Postives = 108/119 (90.76%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGGSSF 381
            ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGD+LLKQYVV DPEI+EEVID SLEFLILASDGLWDVVTNEEAV M + I DPEEAAK+L+QEAY+R S+DNITCVVVRFL  QG S +
Sbjct:  163 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVVDPEIREEVIDHSLEFLILASDGLWDVVTNEEAVDMTRSIHDPEEAAKKLLQEAYKRESSDNITCVVVRFLHGQGSSGY 281          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C71_ARATH (Probable protein phosphatase 2C 71 OS=Arabidopsis thaliana GN=At5g24940 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.525e-49
Identity = 98/122 (80.33%), Postives = 109/122 (89.34%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFL----ANQGGSS 378
            ER+RIE+AGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEE ID SLEFLILASDGLWDV +NEEAVA++K ++DPEE+ K+L+ EA +RGSADNITCVVVRFL    AN  GSS
Sbjct:  170 ERERIENAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDDSLEFLILASDGLWDVFSNEEAVAVVKEVEDPEESTKKLVGEAIKRGSADNITCVVVRFLESKSANNNGSS 291          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C69_ARATH (Probable protein phosphatase 2C 69 OS=Arabidopsis thaliana GN=At5g10740 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 5.794e-49
Identity = 94/118 (79.66%), Postives = 107/118 (90.68%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGGSS 378
            ER+RIE+AGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEE ID +LEFLILASDGLWDV +NE AVAM+K ++DPE++AK+L+ EA +RGSADNITCVVVRFL  +  SS
Sbjct:  170 ERERIENAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDDTLEFLILASDGLWDVFSNEAAVAMVKEVEDPEDSAKKLVGEAIKRGSADNITCVVVRFLEKKSASS 287          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C52_ORYSJ (Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica GN=Os05g0587100 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.022e-42
Identity = 84/123 (68.29%), Postives = 103/123 (83.74%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQ-GGSSFPGS 390
            ER+RIE AGG VMWAGTWRVGGVLA+SRAFG+RLLKQ+VVADPEIQE+ ID  LEFLILASDGLWDVV NE+AV+++K  ++PE AA++L + A+ RGS DNITC+VV+F  ++  G S P S
Sbjct:  366 ERKRIESAGGVVMWAGTWRVGGVLAMSRAFGNRLLKQFVVADPEIQEQEIDDELEFLILASDGLWDVVPNEDAVSLVKIEEEPEAAARKLTETAFSRGSGDNITCIVVKFQHDKMDGDSSPTS 488          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C11_ARATH (Probable protein phosphatase 2C 11 OS=Arabidopsis thaliana GN=At1g43900 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 7.584e-41
Identity = 77/110 (70.00%), Postives = 99/110 (90.00%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 354
            ERQRIEDAGGF++WAGTWRVGG+LAVSRAFGD+ LK YV+A+PEIQEE I S+LEF+++ASDGLW+V++N++AVA+++ I D E AA++L+QE Y RGS DNITC+VVRF
Sbjct:  260 ERQRIEDAGGFIIWAGTWRVGGILAVSRAFGDKQLKPYVIAEPEIQEEDI-STLEFIVVASDGLWNVLSNKDAVAIVRDISDAETAARKLVQEGYARGSCDNITCIVVRF 368          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C07_ORYSJ (Probable protein phosphatase 2C 7 OS=Oryza sativa subsp. japonica GN=Os01g0618200 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.095e-39
Identity = 76/113 (67.26%), Postives = 96/113 (84.96%), Query Frame = 1
Query:   19 RGERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFL 357
            + ER+RIE+AGG V W+GTWRVGGVLA+SRAFG+R LK++VVA+PE+QE+ ID  LEFLILASDGLWDVV+NE AVA +K  + PE AA++L + A+ RGS DNITC+VV+FL
Sbjct:  250 KDERKRIENAGGVVTWSGTWRVGGVLAMSRAFGNRFLKRFVVAEPEVQEQEIDDDLEFLILASDGLWDVVSNEHAVAFVKAEEGPEAAARKLAEIAFARGSTDNITCIVVKFL 362          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C13_ORYSJ (Probable protein phosphatase 2C 13 OS=Oryza sativa subsp. japonica GN=Os02g0255100 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 9.271e-39
Identity = 76/110 (69.09%), Postives = 94/110 (85.45%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 354
            ER+RIE+AGG V+WAGTWRVGGVLA+SRAFG+RLLK +VVA+PEIQEE+++  LE L+LASDGLWDVV NEEAV++ K    PE  A++L + AY RGSADNITC+VV+F
Sbjct:  248 ERKRIENAGGVVIWAGTWRVGGVLAMSRAFGNRLLKPFVVAEPEIQEELVNEDLECLVLASDGLWDVVENEEAVSLAKTEDLPESVARKLTEIAYSRGSADNITCIVVQF 357          
The following BLAST results are available for this feature:
BLAST of CX287350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
P2C59_ARATH2.056e-5489.66Probable protein phosphatase 2C 59 OS=Arabidopsis ... [more]
P2C59_ORYSJ2.513e-5287.72Probable protein phosphatase 2C 59 OS=Oryza sativa... [more]
P2C10_ORYSJ2.513e-5288.29Probable protein phosphatase 2C 10 OS=Oryza sativa... [more]
P2C45_ORYSJ7.312e-5284.03Probable protein phosphatase 2C 45 OS=Oryza sativa... [more]
P2C71_ARATH1.525e-4980.33Probable protein phosphatase 2C 71 OS=Arabidopsis ... [more]
P2C69_ARATH5.794e-4979.66Probable protein phosphatase 2C 69 OS=Arabidopsis ... [more]
P2C52_ORYSJ4.022e-4268.29Probable protein phosphatase 2C 52 OS=Oryza sativa... [more]
P2C11_ARATH7.584e-4170.00Probable protein phosphatase 2C 11 OS=Arabidopsis ... [more]
P2C07_ORYSJ1.095e-3967.26Probable protein phosphatase 2C 7 OS=Oryza sativa ... [more]
P2C13_ORYSJ9.271e-3969.09Probable protein phosphatase 2C 13 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC01008F01SK Veg1 Citrus clementina cDNA clone C01008F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287350 ID=CX287350; Name=CX287350; organism=Citrus clementina; type=EST; length=529bp
CTCGTGCCGAATTCGGCACGAGGTGAGCGTCAACGGATTGAGGATGCAGG
AGGGTTTGTGATGTGGGCTGGAACTTGGAGAGTGGGAGGAGTTCTTGCCG
TTTCTCGCGCATTTGGTGACAGACTCTTGAAGCAGTATGTTGTTGCTGAT
CCCGAAATTCAGGAGGAAGTTATTGACAGCTCCCTTGAGTTTCTTATCCT
TGCAAGTGATGGACTTTGGGATGTCGTCACAAATGAGGAAGCTGTTGCGA
TGATCAAACCAATCCAGGATCCAGAGGAGGCAGCGAAGAGGCTGATGCAG
GAGGCATATCAGAGAGGCAGCGCAGACAACATCACCTGTGTCGTTGTTCG
GTTCTTGGCCAATCAAGGTGGTTCATCCTTTCCTGGCTCTGCATGAACAT
CCTTTCATAGCCACCGCTCTGCTTTTGTTCTCTACATGGGCATCCTTTCA
GTGGTCTACAGCTAGTAGTCATAGAAAAATTACAGTTTCGTTGTACTTTG
TAATGATAGAACATGAACAAAAAGCTTAC
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