CX287359

Overview
NameCX287359
Unique NameCX287359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9801 contig Ccv1_Contig9801:253..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.524e-15
Identity = 36/59 (61.02%), Postives = 50/59 (84.75%), Query Frame = 1
Query:    1 NFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 177
            +FGD+ +AKVI +RE+G+SRGFGFV ++   +A++A S MDG+ELNGR+IRV+ ANDRP
Sbjct:   57 HFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115          
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.504e-12
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    7 GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 180
            G + EA+VI +R+SG+S+GFGFVTYDS++   +A  ++DG +L+GR IRVS A  RPP
Sbjct:  228 GKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285          
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.566e-12
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    7 GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 180
            G + +AKV+ +R+SG+SRGFGFVTY S E  ++A  ++DG +LNGR IRVS A  RPP
Sbjct:  212 GKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 269          
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.566e-12
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    7 GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 180
            G + +AKV+ +R+SG+SRGFGFVTY S E  ++A  ++DG +LNGR IRVS A  RPP
Sbjct:  218 GKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 275          
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.377e-12
Identity = 31/57 (54.39%), Postives = 46/57 (80.70%), Query Frame = 1
Query:    4 FGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 174
            +GD+ ++K+IT+RE+G+SRGFGFVT+ S+E+   A  AM+GQ+L+GRNI V+ A  R
Sbjct:   29 YGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85          
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.716e-12
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    4 FGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 174
            FGDIT++K+I +RE+G+SRGFGFVT+   +S   A   M+GQEL+GRNI V+ A  R
Sbjct:   29 FGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85          
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 7.466e-12
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 NFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 177
            +F  +TEA+V+T + +G+SRG+GFV + S +SA+SA SAM+GQELNG NI V+ A D P
Sbjct:   53 SFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP 111          
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.751e-12
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 NFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 174
            NFG + ++KVIT+RE+G+SRGFGFVT+ S +S   A   M+G+EL+GRNI V+ A  R
Sbjct:   30 NFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.172e-11
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    7 GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 180
            G + EA+V+ +RE+G+SRGFGFVT    +  + A SA+DGQ L GR IRV+ A +RPP
Sbjct:  268 GKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325          
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.172e-11
Identity = 29/57 (50.88%), Postives = 46/57 (80.70%), Query Frame = 1
Query:    7 GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 177
            G++ +AKV+ +R+SG+SRGFGFVTY S++  + A  +++G +L+GR+IRVS A +RP
Sbjct:  231 GNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP 287          
The following BLAST results are available for this feature:
BLAST of CX287359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GRP2_ARATH5.524e-1561.02Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
ROC1_ARATH1.504e-1255.17Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC1_NICSY2.566e-1256.9029 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL2.566e-1256.9030 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
GRP_HORVU4.377e-1254.39Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP1_DAUCA5.716e-1256.14Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
RT19_ARATH7.466e-1255.9340S ribosomal protein S19, mitochondrial OS=Arabid... [more]
GRP2_SORBI9.751e-1255.17Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
ROC3_ARATH2.172e-1153.4531 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC2_NICSY2.172e-1150.8829 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]

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Properties
Property NameValue
Genbank descriptionC01008F12SK Veg1 Citrus clementina cDNA clone C01008F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287359 ID=CX287359; Name=CX287359; organism=Citrus clementina; type=EST; length=434bp
AACTTTGGCGATATCACTGAAGCAAAGGTTATTACTGAGAGAGAATCTGG
GAAGTCAAGAGGATTTGGGTTCGTTACCTACGACTCTAATGAATCTGCCA
GCTCGGCACAGTCTGCAATGGATGGCCAGGAGCTAAATGGGAGAAACATT
CGGGTGTCTTTTGCCAATGACAGACCTCCTCGCTCTGACGGTGGCTATGG
TGGAGGGAATGATGGATCTTATGGCGGCAACCGTGGCGGTTACAGAGTCA
ACTACAGAGGAGGGGATGATGGTTTTTAAGGGGATTCTATTCAATTTTTG
GGCGTGCTTTAACTAGGAATTAAAGTTTTATGTTTGTTTTAAGGATGGAA
GTTTAGCACTACTGAATTTGTTATTATGTTGGCTTTTATTTATCAGCCTT
GCCCCCTTAATTGCATATTATAAAAAAAAAAAAA
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