CX287363

Overview
NameCX287363
Unique NameCX287363
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E138_ARATH (Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 9.257e-62
Identity = 110/132 (83.33%), Postives = 119/132 (90.15%), Query Frame = 2
Query:   23 VNIYPFLSLYGNDDFPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPGYIEVYLFGLVDEDAKSIDPGYFERHWGI 418
            +NIYPFLSLYGNDDFP NYAFFDG  PI D+G  I YTNVFDANFDTLVS+LKAVGHGDMP+IVGEVGWPT+GDK+AN G+AYRFYNGLLP+L  NKGTPLRP YIEVYLFGL+DEDAKSI PG FERHWGI
Sbjct:  202 INIYPFLSLYGNDDFPLNYAFFDGAEPINDNG--IDYTNVFDANFDTLVSSLKAVGHGDMPIIVGEVGWPTEGDKHANAGSAYRFYNGLLPRLGTNKGTPLRPTYIEVYLFGLLDEDAKSIAPGPFERHWGI 331          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 6.665e-44
Identity = 82/133 (61.65%), Postives = 100/133 (75.19%), Query Frame = 2
Query:   23 VNIYPFLSLYGNDDFPFNYAFFDGGT-PIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPGYIEVYLFGLVDEDAKSIDPGYFERHWGI 418
            VNIYP++SLY N DFP +YAFFDG   P+ D GT   Y N+FDAN+DTLV AL+  G G+MP+I+GE+GWPTDGD NAN   A +F  G +  ++  KGTP RPG I+ YLF L+DEDAKS+ PGYFERHWGI
Sbjct:  198 VNIYPYISLYTNPDFPVDYAFFDGNAQPLNDGGTF--YYNMFDANYDTLVHALEKNGFGNMPIIIGEIGWPTDGDSNANLDYAKKFNQGFMAHISGGKGTPRRPGPIDAYLFSLIDEDAKSVQPGYFERHWGI 328          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.624e-43
Identity = 83/133 (62.41%), Postives = 102/133 (76.69%), Query Frame = 2
Query:   23 VNIYPFLSLYGNDDFPFNYAFFDG-GTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPGYIEVYLFGLVDEDAKSIDPGYFERHWGI 418
            +NIYPF+SLY + +FP  +AFFDG GTPI D+G    Y NV DAN+DTLV +L+  G G++ +IVGEVGWPTDGDKNAN   A R+  G + +  ANKGTP+RPG ++ YLFGL+DEDAKSI PG FERHWGI
Sbjct:  203 INIYPFISLYNDPNFPVEFAFFDGTGTPINDNGR--IYDNVLDANYDTLVWSLQKNGFGNLTIIVGEVGWPTDGDKNANLMYARRYNQGFMNRQKANKGTPMRPGAMDAYLFGLIDEDAKSIQPGNFERHWGI 333          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.035e-20
Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = 2
Query:   23 VNIYPFLSLYGNDDFPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPGYIEVYLFGLVDEDAKSIDPGYFERHWGI 418
            V I PFLS + N +   +++ F         G    Y N FD ++DTLVSAL  +G  ++ ++V ++GWPTDG +NA +  A  F+ GL+  L     +  RP  +E Y+  L+DED +++  G FERHWG+
Sbjct:  203 VTISPFLSFHQNKNISLDFSLFKETAKAHKDGRKT-YRNSFDLSYDTLVSALFTIGFSEVDIVVSKIGWPTDGAENATSLTAEAFFKGLIVHLEKKTASLPRPP-VETYIESLLDEDQRNLSAGNFERHWGV 332          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 53/134 (39.55%), Postives = 80/134 (59.70%), Query Frame = 2
Query:   26 NIYPFLSLYGND-DFPFNYAFFD-GGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPGYIEVYLFGLVDEDAKSIDPGY-FERHWGI 418
            N+YP+ +  GN  D   NYA F  G TP+ D+G G+ YTN+F+A  D + +AL+  G   + ++V E GWP+ G   A   NA  +  GL+  +A   GTP +PG++E Y+F + +E+ K   PG   ERH+G+
Sbjct:  167 NVYPYFAYSGNPRDIKLNYATFQPGATPVRDAGNGLIYTNLFNAMVDAMYAALEKAGAPSVRVVVSESGWPSAGGFAATPENARAYNQGLIDHVA--HGTPKKPGHMEAYVFAMFNENQK---PGLETERHFGL 295          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E13A_ARATH (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Arabidopsis thaliana GN=BG2 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.810e-18
Identity = 51/134 (38.06%), Postives = 78/134 (58.21%), Query Frame = 2
Query:   23 VNIYPFLSLYGND-DFPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPG-YIEVYLFGLVDEDAKSIDPGYFERHWGI 418
            VN+YP+ S  G+  +   +YA F   +  VD+  G  Y N+FDAN D++ +AL+  G G + ++V E GWPT+G    +  NA  + N L+  +    G+P RPG  IE Y+F + DE+ K  +P Y E+ WG+
Sbjct:  198 VNLYPYFSYMGDTANIHLDYALFTAQST-VDNDPGYSYQNLFDANLDSVYAALEKSGGGSLEIVVSETGWPTEGAVGTSVENAKTYVNNLIQHV--KNGSPRRPGKAIETYIFAMFDENKK--EPTY-EKFWGL 325          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E13E_HORVU (Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.204e-18
Identity = 49/134 (36.57%), Postives = 79/134 (58.96%), Query Frame = 2
Query:   26 NIYPFLSLYGND---DFPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPGYIEVYLFGLVDEDAKSIDPGYFERHWGI 418
            N+YP+ + Y +D   +   NYA    GT + D+G G+ YT++FDA  D++ +AL+  G  ++ ++V E GWP+ G   A+  NA  +  GL+  +    GTP RPG IE Y+F + +E+ K  D    ER++G+
Sbjct:  173 NVYPYFA-YRDDRGQNIRLNYATLQPGTTVRDNGNGLTYTSLFDAMVDSIYAALEKAGTPNVRVVVSESGWPSAGGFGASVENARNYNQGLIDHI--RSGTPKRPGAIETYIFAMFNENRKPGDE--VERNFGL 301          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E13B_MAIZE (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.399e-17
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 2
Query:   26 NIYPFLSLYGND-DFPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSALKA-VGHGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPGYIEVYLFGLVDEDAKSIDPGYFERHWGI 418
            N+YP+ S  GN       YA F     +V  G+   Y N+FDA  DT VSAL+   G G++P++V E GWP+ G   A   NA  +   L+  +   +GTP RPG IE Y+F + +ED K+      ERH+G+
Sbjct:  194 NVYPYFSYVGNPAQIDLKYALFTSPGTVVQDGSNA-YQNLFDALVDTFVSALEENAGAGNVPVVVSESGWPSAGGDAATAANAQTYNQNLINHVG--QGTPKRPGPIETYIFAMFNEDQKT--GAESERHFGL 321          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.118e-17
Identity = 52/125 (41.60%), Postives = 73/125 (58.40%), Query Frame = 2
Query:   23 VNIYPFLSLYGNDDFPFNYAF--FDGGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKN---ANNGNAYRFYNGLLPKLAANKGTPLRPGY-IEVYLFGLVDEDAK 379
            +N YPF + Y +D  P   AF  F+     VDS TGI+YTN+FDA  D + SALK++G   + ++V E GW + GD N   A+  NA  +   L+  L +  GTPL PG  ++ Y+F L DE+ K
Sbjct:  198 INPYPFFA-YQSDPRPETLAFCLFEPNAGRVDSKTGIKYTNMFDAQVDAVHSALKSMGFEKVEIVVAETGWASRGDANEVGASVDNAKAYNGNLIAHLRSMVGTPLMPGKPVDTYIFALYDENLK 321          
BLAST of CX287363 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.072e-17
Identity = 48/133 (36.09%), Postives = 74/133 (55.64%), Query Frame = 2
Query:   23 VNIYPFLSLYGND-DFPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPGYIEVYLFGLVDEDAKSIDPGYFERHWGI 418
            VNIYP+ S  GN       YA F     +V  G+  QY N+FDA  D++ +A++  G G + ++V E GWP+ G   A   NA  +   L+    A +G+P +PG IE Y+F + DE+ K+ +    E+H+G+
Sbjct:  200 VNIYPYFSYSGNPGQISLPYALFTAPNVVVQDGSR-QYRNLFDAMLDSVYAAMERTGGGSVGIVVSECGWPSAGAFGATQDNAATYLRNLIQH--AKEGSPRKPGPIETYIFAMFDENNKNPE---LEKHFGL 326          
The following BLAST results are available for this feature:
BLAST of CX287363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
E138_ARATH9.257e-6283.33Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis ... [more]
E136_ARATH6.665e-4461.65Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
E135_ARATH9.624e-4362.41Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]
E139_ARATH1.035e-2037.88Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]
E13D_HORVU8.766e-2039.55Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E13A_ARATH4.810e-1838.06Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13E_HORVU8.204e-1836.57Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vul... [more]
E13B_MAIZE1.399e-1739.10Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E137_ARATH3.118e-1741.60Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E132_SOLTU4.072e-1736.09Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]

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Properties
Property NameValue
Genbank descriptionC01008G04SK Veg1 Citrus clementina cDNA clone C01008G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287363 ID=CX287363; Name=CX287363; organism=Citrus clementina; type=EST; length=418bp
CTCGTGCCGAATTCGGCACGAGGTAAACATCTATCCTTTCCTAAGTCTTT
ATGGAAACGATGACTTCCCTTTTAACTATGCTTTCTTTGATGGGGGTACT
CCCATTGTTGATAGCGGAACTGGGATTCAATACACAAATGTTTTTGACGC
CAATTTTGACACTTTGGTTTCGGCTCTGAAAGCTGTTGGCCATGGAGACA
TGCCTATGATTGTAGGAGAGGTGGGTTGGCCAACTGATGGGGACAAGAAT
GCGAATAATGGTAATGCTTATAGATTCTACAATGGACTTTTACCAAAACT
TGCAGCCAATAAAGGCACTCCACTGCGGCCTGGATATATTGAAGTGTACT
TGTTTGGGTTAGTTGATGAGGATGCAAAGAGTATTGATCCTGGATATTTT
GAGCGTCACTGGGGAATC
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