CX287364

Overview
NameCX287364
Unique NameCX287364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14664 contig Ccv1_Contig14664:74..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287364 vs. ExPASy Swiss-Prot
Match: UGPI5_ARATH (Uncharacterized GPI-anchored protein At1g27950 OS=Arabidopsis thaliana GN=At1g27950 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.532e-32
Identity = 64/102 (62.75%), Postives = 80/102 (78.43%), Query Frame = 2 
Query:   92 ECGEYLQKTMACLDFARGKITTPSKECCSAVKGIKDDDPKCLCYIIKEANGGEGDMVKNLGVQVPKLLQLPSACQLKNASTSLCPKLLGLSPSSPDAAIFTN 397
            EC +  QK   CLDFA GK T PSK+CC AV+ IK+ DPKCLC++I++A  G G  +K+LGVQ  KL+QLP++CQL NAS + CPKLLG+SPSSPDAA+FTN
Sbjct:   34 ECNQDFQKVTLCLDFATGKATIPSKKCCDAVEDIKERDPKCLCFVIQQAKTG-GQALKDLGVQEDKLIQLPTSCQLHNASITNCPKLLGISPSSPDAAVFTN 134
The following BLAST results are available for this feature:
BLAST of CX287364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UGPI5_ARATH1.532e-3262.75Uncharacterized GPI-anchored protein At1g27950 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC01008G05SK Veg1 Citrus clementina cDNA clone C01008G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287364 ID=CX287364; Name=CX287364; organism=Citrus clementina; type=EST; length=398bp
GATGATGGGAATGAAAAAAGGGTTTCTATGTGGCATATTGTTTGGCTTCA
TAGCGTTAAGGGTTGTAACGGCTGATGACGCTACAAATAAGGAGTGTGGT
GAGTATTTGCAGAAGACGATGGCCTGTTTGGATTTTGCAAGGGGGAAGAT
TACGACTCCGTCCAAAGAATGTTGCAGCGCTGTGAAGGGTATAAAAGACG
ATGATCCAAAGTGTTTGTGTTATATCATCAAGGAGGCTAATGGCGGTGAA
GGCGATATGGTTAAGAACTTGGGCGTGCAGGTGCCTAAGCTGCTTCAGCT
TCCATCCGCTTGCCAGTTGAAAAATGCCAGCACCAGTCTCTGCCCAAAGC
TTCTAGGGCTATCTCCTAGCTCTCCAGATGCTGCAATATTCACAAATA
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